Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00440 ATGAAGACTTTCTCCTCAGTTCAACTACCCCACCATTTTTATTCTGCAAGATTCTTCTCTTGCACAACCACGAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGCATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACACTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGGCCTTGTTCTTGAAGAAACAAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTCATTGATCACCTTGTCTCAAAGCTTCATTCCAAACACAGATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCCCTGTTTGAAGAGCATGGTGACATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGACAAATCAGCAGTGCCAGTTTCTCCTTCTAGTCCTGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACCAAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGATCAGATTCGAAGTATCACACACCGATTCCCGGCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCTGTGGTTGAGTTTTTTCTTGAACTTGGGGTGCCAAAAGAGCACATTCCATCTATTCTCAGTAAAAGGCCTCAATTATGTGGTTTCAGTTTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTGGGTATTGACAAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCGGCCTTGATAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTTCTTGAATTGGGCCTATCTGAAGAGAATATAGGTAAGATTTTAACTCGTTGCCCGCATATCGTTAGTTATAGTGTAGAGGACAATCTCCGACCGACGGCGAAGTACTTCCGTTCTTTAGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGGCCAACCTGAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTTAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACTGGATACCCAAACTCTGAGCTGGTTAAGTTTCCTCAGTATTTTGGATACAGCTTAGAGAAAAGGATTAAGCCTAGATTTGCAATCATGAAGAAATCTGGGGTAAGGTTACTGCTGAACCAGGTTCTTTCTCTGTCAAGCAACAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAG 1416 0.4138 MKTFSSVQLPHHFYSARFFSCTTTRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLALFLKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHRSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVSPSSPVLDSKKLKAVSLVSETDQDGGNLRPHIVYLMELGMDIDQIRSITHRFPAFAYYSLEGKVKPVVEFFLELGVPKEHIPSILSKRPQLCGFSLSENLKPTMKFLESLGIDKKQWPKVIYRFPALITYSRQKVMESIDFLLELGLSEENIGKILTRCPHIVSYSVEDNLRPTAKYFRSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPNSELVKFPQYFGYSLEKRIKPRFAIMKKSGVRLLLNQVLSLSSNNFDKALKKKMKKMQDG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00440 471 Pfam mTERF 346 457 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 Pfam mTERF 181 364 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 Gene3D Transcription termination factor 3, mitochondrial 249 467 IPR038538 -
Viun4g00440 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 PANTHER CGI-12 PROTEIN-RELATED 133 462 IPR003690 GO:0003690|GO:0006355
Viun4g00440 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00440 Viun-Chr4 2963089 2966335 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun4g00440 mTERF 3.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00440 K15032 - gmx:100781900 774.237