Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00430 ATGGTGTTGGGATGGAGAAGGAGGAAGGGAAACAGCAAGCACAAAAAAGGTGGGAAACCGATGATGGAGTTGGTGGTTCCGAACTCCTTCAGGTGTCCAATTTCTCTCGACATGATGAAGGATCCTGTGACGCTGTCGACTGGGATAACCTACGACAGGGAGAATGTGGAGAGGTGGTTCGAAGAAGGGAACATCACATGTCCAGTTACCAACCAGGTTGTGAGAAACTTCGACATGATTCCAAACCATTCTCTCAGGATAATGATCCAAGATTGGTGTGTGGAGAATAGGCAACACGGGGTGGAGAGGATTCCAACACCAAGAATACCAATCAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAGGTGAAGAACTCAGCAAGGCGTTTGGACCAATATGGCTGTGTTGAATTGGTGCAGAAAATGAGGAAATGGGGTGGGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGAGAATGGGGCACCTGTGGCATTGGCTTCATCGTTTGATGCATTTGCCAATGACTCAGTGGAGAGAAACGTGGTGGTTCTTGAGGAGATTTTGTCAGCACTGAATTGGATGTTTCCACTTCAACTTGAGGCACACAAGTGCCTGGGATCTCTGGCTTCTCTGAGGTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAATCCATTGTGGCATTATCAGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTTGAGGCCTTGTCACAGATTGAAGGGGTGAATGAACTCTTGGTGGAGTTCATCAACAAGAAAATTAGTCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCATCATCATCATCTTCAAATTCCAGTGAGAAAATGAAATTTTCATTTGTTGAACTGGGTTTGGTTTCTTCTTTGCTTGAGATTCTCATTGACTCAGACAAGAGCAGGTATGAGAAGGCTTTGGCCATTTTGGATTCTCTATTTACCTCTGAAGAAGGAAGAAACATAGCATGTGGGAATGATCTAACAGTTCCTCTTCTGGTGAAGAAAATTCTGAGAGTTTCACCTTTGAGCACAGACTATTCTGTCTCTGCCCTTTGGAAATTGTGCAAGTTTGGAGAAAAAGATGAAGGAAGAAGCATTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGCTGGTGTTGCAGGTTGGTTGTGGTGAAGAAACCAAGGAGAAAGCCACAGAACTTCTCAAGTTGATGAACCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1323 0.449 MVLGWRRRKGNSKHKKGGKPMMELVVPNSFRCPISLDMMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKNSARRLDQYGCVELVQKMRKWGGESERNKRCIVENGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKCLGSLASLRCMVWFLKHQDLSGKEKSIVALSELLSFGDVQHVEALSQIEGVNELLVEFINKKISPTITKASLRVVWYLVSSSSSSSNSSEKMKFSFVELGLVSSLLEILIDSDKSRYEKALAILDSLFTSEEGRNIACGNDLTVPLLVKKILRVSPLSTDYSVSALWKLCKFGEKDEGRSIVEALQVGAFQKLLLVLQVGCGEETKEKATELLKLMNPYRAELECIDSDYKNVKRSF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00430 440 MobiDBLite consensus disorder prediction 1 15 - -
Viun4g00430 440 MobiDBLite consensus disorder prediction 1 20 - -
Viun4g00430 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Viun4g00430 440 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Viun4g00430 440 Gene3D - 116 420 IPR011989 -
Viun4g00430 440 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Viun4g00430 440 PANTHER WDSAM1 PROTEIN 22 420 IPR045185 GO:0061630
Viun4g00430 440 SUPERFAMILY RING/U-box 22 102 - -
Viun4g00430 440 CDD RING-Ubox_PUB 27 79 IPR045210 -
Viun4g00430 440 SUPERFAMILY ARM repeat 147 419 IPR016024 -
Viun4g00430 440 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Viun4g00430 440 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00430 Viun-Chr4 2925815 2927684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00430 5 440 U-box Gene Family AT5G37490 43.243 5.55e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00430 - - gmx:100794340 759.214