LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00430	ATGGTGTTGGGATGGAGAAGGAGGAAGGGAAACAGCAAGCACAAAAAAGGTGGGAAACCGATGATGGAGTTGGTGGTTCCGAACTCCTTCAGGTGTCCAATTTCTCTCGACATGATGAAGGATCCTGTGACGCTGTCGACTGGGATAACCTACGACAGGGAGAATGTGGAGAGGTGGTTCGAAGAAGGGAACATCACATGTCCAGTTACCAACCAGGTTGTGAGAAACTTCGACATGATTCCAAACCATTCTCTCAGGATAATGATCCAAGATTGGTGTGTGGAGAATAGGCAACACGGGGTGGAGAGGATTCCAACACCAAGAATACCAATCAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAGGTGAAGAACTCAGCAAGGCGTTTGGACCAATATGGCTGTGTTGAATTGGTGCAGAAAATGAGGAAATGGGGTGGGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGAGAATGGGGCACCTGTGGCATTGGCTTCATCGTTTGATGCATTTGCCAATGACTCAGTGGAGAGAAACGTGGTGGTTCTTGAGGAGATTTTGTCAGCACTGAATTGGATGTTTCCACTTCAACTTGAGGCACACAAGTGCCTGGGATCTCTGGCTTCTCTGAGGTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAATCCATTGTGGCATTATCAGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTTGAGGCCTTGTCACAGATTGAAGGGGTGAATGAACTCTTGGTGGAGTTCATCAACAAGAAAATTAGTCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCATCATCATCATCTTCAAATTCCAGTGAGAAAATGAAATTTTCATTTGTTGAACTGGGTTTGGTTTCTTCTTTGCTTGAGATTCTCATTGACTCAGACAAGAGCAGGTATGAGAAGGCTTTGGCCATTTTGGATTCTCTATTTACCTCTGAAGAAGGAAGAAACATAGCATGTGGGAATGATCTAACAGTTCCTCTTCTGGTGAAGAAAATTCTGAGAGTTTCACCTTTGAGCACAGACTATTCTGTCTCTGCCCTTTGGAAATTGTGCAAGTTTGGAGAAAAAGATGAAGGAAGAAGCATTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGCTGGTGTTGCAGGTTGGTTGTGGTGAAGAAACCAAGGAGAAAGCCACAGAACTTCTCAAGTTGATGAACCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA	1323	0.449	MVLGWRRRKGNSKHKKGGKPMMELVVPNSFRCPISLDMMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKNSARRLDQYGCVELVQKMRKWGGESERNKRCIVENGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKCLGSLASLRCMVWFLKHQDLSGKEKSIVALSELLSFGDVQHVEALSQIEGVNELLVEFINKKISPTITKASLRVVWYLVSSSSSSSNSSEKMKFSFVELGLVSSLLEILIDSDKSRYEKALAILDSLFTSEEGRNIACGNDLTVPLLVKKILRVSPLSTDYSVSALWKLCKFGEKDEGRSIVEALQVGAFQKLLLVLQVGCGEETKEKATELLKLMNPYRAELECIDSDYKNVKRSF	440

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00430	440	MobiDBLite	consensus disorder prediction	1	15	-	-
	Viun4g00430	440	MobiDBLite	consensus disorder prediction	1	20	-	-
	Viun4g00430	440	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	6	104	IPR013083	-
	Viun4g00430	440	FunFam	RING-type E3 ubiquitin transferase	26	97	-	-
	Viun4g00430	440	Gene3D	-	116	420	IPR011989	-
	Viun4g00430	440	SMART	Ubox_2	29	92	IPR003613	GO:0004842\|GO:0016567
	Viun4g00430	440	PANTHER	WDSAM1 PROTEIN	22	420	IPR045185	GO:0061630
	Viun4g00430	440	SUPERFAMILY	RING/U-box	22	102	-	-
	Viun4g00430	440	CDD	RING-Ubox_PUB	27	79	IPR045210	-
	Viun4g00430	440	SUPERFAMILY	ARM repeat	147	419	IPR016024	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00430	Viun-Chr4	2925815	2927684	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00430	5	440	U-box Gene Family	AT5G37490	43.243	5.55e-113	337

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00430	-		-	gmx:100794340	759.214

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