Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00422 ATGGCACTTGTCCGCCACCGCCGCCATCCCAATCTCCGCCTACCTCTCCCGGAGATCTCAGAGCGCCGCCCCCGCTTCCCGCTCCCCCTCCCTCCCACCGCCCCCAAACCCGCCGCCGGAGACGCCATCACCGCCGCCGACCTCGAAAACATCGCCGTGCTCGGCCACGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGACAACCTCTGCCACCTACGCCCTCAAAATCATCCACAGCAACGCCGACGCCACCATGCGCCGCCGCGCGTTCTCGGAAACCTCCATCCTCCGCCGCGCCACCGACTGCCCCCACGTCGTGCGCTTCCACGGCTCCTTCGAAAAGCCCTCCGGCGACGTCGCCATCCTCATGGAGTACATGGACGGCGGCACCCTCGAGACCGCCCTCGCCACCGGCGGCACGTTCTCCGAGGAGAGGCTCGCCGCGGTGGCGCGTGATATCCTCGAGGGCCTCGCGTGCCTCCACTCGCGCAACATCGCGCACCGCGACATCAAACCTGCGAACATCCTCGTAAACTCCCAGGGAGAAGTTAAAATTGCAGACTTCGGAGTCAGCAAACTCATGTGCCGCACGCTCGAAGCCTGCAACTCCTATGTCGGCACGTGCGCGTACATGAGTCCCGAACGGTTCGACCCGGAAGCATCCGGCGGAAACTACAACGGTTTCGCTGCGGATATTTGGAGTTTGGGTTTGACCCTCTTTGAACTTTACGTGGGTCATTTCCCGTTTCTTGAAACGGGTCAGCGACCCGACTGGGCTACCCTTATATGTGCCATTTGTTACGGCGACCCGCCTAGCCTCCCCGCGACGGCGTCAGCGGAATTTCGCAGCTTCGTCGAATCCTGCCTCAAGAAGGAGTCCGGTGATAGGTGGACGGCGGCACAACTCTTGACCCACCCGTTTGTGTGCAAAAACCCGGAAACTCACTAA 954 0.6258 MALVRHRRHPNLRLPLPEISERRPRFPLPLPPTAPKPAAGDAITAADLENIAVLGHGNGGTVYKVRHKTTSATYALKIIHSNADATMRRRAFSETSILRRATDCPHVVRFHGSFEKPSGDVAILMEYMDGGTLETALATGGTFSEERLAAVARDILEGLACLHSRNIAHRDIKPANILVNSQGEVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEASGGNYNGFAADIWSLGLTLFELYVGHFPFLETGQRPDWATLICAICYGDPPSLPATASAEFRSFVESCLKKESGDRWTAAQLLTHPFVCKNPETH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00422 317 FunFam Mitogen-activated protein kinase 2 130 317 - -
Viun4g00422 317 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 312 - -
Viun4g00422 317 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Viun4g00422 317 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00422 317 MobiDBLite consensus disorder prediction 15 39 - -
Viun4g00422 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Viun4g00422 317 Gene3D Phosphorylase Kinase; domain 1 39 123 - -
Viun4g00422 317 FunFam Dual specificity mitogen-activated protein kinase kinase 36 128 - -
Viun4g00422 317 CDD PKc_MAPKK_plant_like 46 310 - -
Viun4g00422 317 MobiDBLite consensus disorder prediction 22 36 - -
Viun4g00422 317 Pfam Protein kinase domain 50 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00422 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Viun4g00422 317 Gene3D Transferase(Phosphotransferase) domain 1 124 317 - -
Viun4g00422 317 ProSiteProfiles Protein kinase domain profile. 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00422 Viun-Chr4 2879931 2881245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00422 1 310 MAP Kinase Kinase Gene Family AT1G73500 60.577 5.16e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun4g00422 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00422 K20604 - gmx:100804100 553.132