Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00420 ATGGAATCTCACAGGCCTAACACTACTATTCACACCTACAAACAACTACAACAACAAGATCATGATGACGAGGAAGAAGTAGAAGAACAAAACAATGAGATCCTCAAGACAAGAATCTCCAACCACCCTCTCTATGGAGTGCTGCTTCAAGCTCACCTCGACTGTTTAAAGGTCGGTGAGATTTCCAAGTTGGAGAGAGAGGTGAAGATAGATGAGATGAAAGCAAGAGAGAAGCAAAAGTTGGACATGTTGAGTCAATCTGAGCTTGATCTCTTCATGGAAGCATATTGCTTGTCACTTGGGAAGCTTAAAGAAGCAATGGTGGAACCACAGCAGAAGTCCATGGCTTTCATAAACAACATGCATTCACAACTCAGAGAGATCACTGCACCATCTTCTGAACCTGCACCACCTTCTGCATCTTCTAGTCACTGCAATTTCACAACAAATTAG 453 0.426 MESHRPNTTIHTYKQLQQQDHDDEEEVEEQNNEILKTRISNHPLYGVLLQAHLDCLKVGEISKLEREVKIDEMKAREKQKLDMLSQSELDLFMEAYCLSLGKLKEAMVEPQQKSMAFINNMHSQLREITAPSSEPAPPSASSSHCNFTTN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00420 150 Pfam KNOX1 domain 35 59 IPR005540 GO:0003677|GO:0005634
Viun4g00420 150 Coils Coil 13 33 - -
Viun4g00420 150 MobiDBLite consensus disorder prediction 1 22 - -
Viun4g00420 150 Coils Coil 61 81 - -
Viun4g00420 150 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 14 132 - -
Viun4g00420 150 MobiDBLite consensus disorder prediction 128 150 - -
Viun4g00420 150 SMART KNOX1_2 33 79 IPR005540 GO:0003677|GO:0005634
Viun4g00420 150 SMART KNOX2_2 79 130 IPR005541 GO:0003677|GO:0005634
Viun4g00420 150 Pfam KNOX2 domain 86 129 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00420 Viun-Chr4 2855850 2858117 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00420 33 125 Homeobox Transcription Factor Family AT4G08150 39.394 9.04e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00420 - - gmx:100805160 186.422