Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00411 ATGCCATTGATTCGCACTACTCCACCGCTTCCTTGTGCCATTTCCACACTCACCACACTTACCAATGCACCTCCATCATCATCTTCCACTCTTTCTGCTGCCACATTCGGTTCCCACCTTCTGCGTAAAATTCAGAACCCAATTATTGGGTTTTCGGCAACCAGGAATCGCTCGCGTGCTGCGGTGATCAGAGCCAAAGCAGGGGCCGATTACTATTCCACCTTGAACGTTAGCCCCAGTGCTTCGCTGCAAGAAATCAAGGCCTCCTATCGCAAGCTGGCGCGCAAGTACCATCCAGATATGAACAAAAGCCCTGGGGCTGAGGAGAAGTTCAAAGAAATAAGTGCTGCATATGAGGTCCTATCAGATGACGAGAAAAGATCTTTATATGATCGTTTTGGCGAGTTAGGTCTTCAAGAAGAAAATGGAGGGTCAAGTGGTGCTCCAGGGGTGGATCCTTTTGATTTATTCGATACATTCTTTGGTCGTTCTGATGGAATATTTAGAGATGGTGATGACGGGGGCATCAACTTCAATTTTGGTAACAAGAGAAACCGTAGTCATGATATTCGATATGACCTTAATTTGAGCTTTGAAGAATCAATATTTGGAGCACAGAGGGAGATTGAAGTTTCCTGTTTTCAGACATGTGACACTTGTGATGGTACAGGAGCTAAATCAAAGAATTGCATTAAGCAATGCACAAATTGTGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCTAAGTGTAGTGGCCTTGGTAAAATAATCACAGATCACTGTCGAAGGTGTGATGGCAGTGGTCAGGTGCAATCCAAACAAACAATCGAAGTGGACATTCCTGCTGGAGTCAATGATGGAGACACAATGCAAATTCAAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTTGTTGTCTTGCATGTAGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATATTGGGGTCAGTTAAAAAGGTTGAAACTGTTGAAGGTTTACGGGATCTTCAAATTCCTTCAGGGATTCAAACTGGTGACTCGGTGAAGTTGTCACGTTTGGGAGTTCCAGACATGAATAAACCATTTGTTCGAGGCAATCATTACTTCATTGTGAATGTTCTTATTCCAAAGGATATCAGTGGCACCGAACGTGCGCTTGTTGAGCAGTTAGCTTCACTAAGAGCTTCTAACAAAAGGGATTCACTGTCTTCGGGTGACAACGGAATACCTAAAGGAAAGTTCAACGAATTCACTGAGAGGAGGGATCCAAGGGGTGATGGTTCAAGCAAAATAAAAAATGTTGACTCTCTATGGGGATCGATCAAGAACTTCTTAAGTGGAAGACAGTCCGATGAAAGGTTTGCTTCAATTAGCATGGATACATCAGCATTAATACGGAGATATGGTGACCAAAATCCGTCTGTCCTTAATTTCTTTATTGTTCTTTTTGTTGTAACTTGGATTTTTGCCTTGAGAGCAAAGTCTAAGTACTCGATGCTTCAGAAAATATCTGAGTCCTTAAATAGAACACAGTGA 1632 0.4246 MPLIRTTPPLPCAISTLTTLTNAPPSSSSTLSAATFGSHLLRKIQNPIIGFSATRNRSRAAVIRAKAGADYYSTLNVSPSASLQEIKASYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGELGLQEENGGSSGAPGVDPFDLFDTFFGRSDGIFRDGDDGGINFNFGNKRNRSHDIRYDLNLSFEESIFGAQREIEVSCFQTCDTCDGTGAKSKNCIKQCTNCGGRGGEMKSQRTPFGMMSQVSTCSKCSGLGKIITDHCRRCDGSGQVQSKQTIEVDIPAGVNDGDTMQIQGQGNFDKKRQITGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGIQTGDSVKLSRLGVPDMNKPFVRGNHYFIVNVLIPKDISGTERALVEQLASLRASNKRDSLSSGDNGIPKGKFNEFTERRDPRGDGSSKIKNVDSLWGSIKNFLSGRQSDERFASISMDTSALIRRYGDQNPSVLNFFIVLFVVTWIFALRAKSKYSMLQKISESLNRTQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00411 543 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 429 - -
Viun4g00411 543 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Viun4g00411 543 PRINTS DnaJ domain signature 126 145 IPR001623 -
Viun4g00411 543 PRINTS DnaJ domain signature 106 126 IPR001623 -
Viun4g00411 543 PRINTS DnaJ domain signature 90 105 IPR001623 -
Viun4g00411 543 PRINTS DnaJ domain signature 72 90 IPR001623 -
Viun4g00411 543 SMART dnaj_3 69 126 IPR001623 -
Viun4g00411 543 MobiDBLite consensus disorder prediction 430 462 - -
Viun4g00411 543 Gene3D - 188 323 - -
Viun4g00411 543 MobiDBLite consensus disorder prediction 445 461 - -
Viun4g00411 543 FunFam Chaperone protein dnaJ A6 chloroplastic 67 173 - -
Viun4g00411 543 Gene3D - 331 438 - -
Viun4g00411 543 SUPERFAMILY Chaperone J-domain 69 170 IPR036869 -
Viun4g00411 543 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Viun4g00411 543 CDD DnaJ 70 123 IPR001623 -
Viun4g00411 543 Gene3D - 217 281 - -
Viun4g00411 543 Pfam DnaJ C terminal domain 190 408 IPR002939 -
Viun4g00411 543 Pfam DnaJ domain 70 131 IPR001623 -
Viun4g00411 543 Gene3D DnaJ domain 67 170 IPR036869 -
Viun4g00411 543 Hamap Chaperone protein DnaJ [dnaJ]. 67 466 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun4g00411 543 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 418 IPR008971 GO:0006457|GO:0051082
Viun4g00411 543 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 327 IPR008971 GO:0006457|GO:0051082
Viun4g00411 543 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Viun4g00411 543 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 284 IPR036410 -
Viun4g00411 543 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Viun4g00411 543 FunFam Molecular chaperone DnaJ 209 286 - -
Viun4g00411 543 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Viun4g00411 543 CDD DnaJ_C 189 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00411 Viun-Chr4 2756984 2765761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00411 71 131 C2H2 Transcription Factor Family AT1G74250 43.284 9.88e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00411 K03686 - gmx:100782135 848.58