Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00410 ATGCAACATTCTCACAAACTTTTTCCCACCATTCTCTTTCTCTTTTTCTTCTTCCCTTCAACATTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTGCTCTGGAACACCACCTTCCGCTCGCCCTGCGTCTGGCCCGGCGTCCAATGCGATGCTGCCAATGCCACCGTGGTGGAGCTTCACCTCCCCGCCGTCGCTCTCTCCGGCGAGCTTCCCGACGGTGTGTTCCCGGAGCTCCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCCGGCGCCCTCCCCGCCGACCTTGCTTCCTGCACCACCCTCCGCAACCTATTCCTCCAACAGAACCACTTCACCGGAGAAGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGGCCCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTCTCCTTGAGAACAATCGGCTCACCGGTTCGTTACCCGGTTTGGAAGAACTGGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATGATGGTGGTGCAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGTGGAGGGAGTGTGATTGGAGGGGAAAAGAAGAAGGGGAAGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGGTGCGTGGTGGCTCTTTTGTTAGTTGTGTTTGCTTTGATTCTTTTGTGTAGAAGTGGGAAAAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGTGTTGAAGGAGGAGCCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGGGGTGGGGATTCGGTGGCGGCGTCGGCGGCGGCGGCGGTCGCGGCAGTGGGTGGTGGAAGTGGTGGAGAGAAGAAGTTGGTGTTTTATGGAAATAAGGTGAAGGTGTTTGATTTGGAGGATTTGCTGAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGGACCACTTATAAGGCTGTTTTAGAGGATGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTTGGAGTGATGGACCATCAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAACTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTTTGCATGGAAACAAAGGAGCTGGTAGGACACCATTGAATTGGGAAATGAGATCAGACATTGCATTAGGAGCTGCTCGTGGCATCGAGTACCTACATTCACAAGGGCCTAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATCCTCCTAACCAAATCCTATGATGCCAGGGTGTCTGATTTTGGGCTTGCACACCTTGTCGGCCCCTCATCCACACCCAACAGGGTGGCCGGCGGCTACCGTGCCCCCGAAGTAACCGATCCCCGCCGGGTTTCTCAGAAGGCCGATGTGTACAGTTTTGGAGTGTTGCTGTTGGAACTTCTGACCGGAAAGGCTCCAACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTCCAATCAGTGGTTAGAGAGGAATGGAGTTCAGAAGTGTTTGATATTGAACTCCTAAGGTATCACAATTCTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTGGATTGTGTAGTTCCATACCCTGATAACCGCCCTTCAATGTCTCAAGTGAGACTACGCATGGAAGAGTTTCGTAGGTCTGGTGCCATGAAAGAGGGTACTCAAGACCAAATCCAACAACCTCATTTCATCGATGATGATATACAAGATGTATCATCATCTAGATGA 2019 0.5206 MQHSHKLFPTILFLFFFFPSTFSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWPGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGALPADLASCTTLRNLFLQQNHFTGEVPAFLSGMTGLVRLNLASNNFSGPFPARFGNLTRLRTLLLENNRLTGSLPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDGGANGSSNSSGVGGGGGSVIGGEKKKGKKLSGGAIAGIVVGCVVALLLVVFALILLCRSGKKTRSVDNVSNVVVLKEEPQQHGEVGIEGGNVESGGGGGDSVAASAAAAVAAVGGGSGGEKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEDGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHQNLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGNKGAGRTPLNWEMRSDIALGAARGIEYLHSQGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYHNSEEEMVQLLQLAVDCVVPYPDNRPSMSQVRLRMEEFRRSGAMKEGTQDQIQQPHFIDDDIQDVSSSR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00410 672 SUPERFAMILY L domain-like 42 207 - -
Viun4g00410 672 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Viun4g00410 672 Gene3D Ribonuclease Inhibitor 137 227 IPR032675 -
Viun4g00410 672 SUPERFAMILY Protein kinase-like (PK-like) 375 636 IPR011009 -
Viun4g00410 672 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Viun4g00410 672 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Viun4g00410 672 Gene3D Transferase(Phosphotransferase) domain 1 446 665 - -
Viun4g00410 672 MobiDBLite consensus disorder prediction 649 672 - -
Viun4g00410 672 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Viun4g00410 672 Pfam Protein kinase domain 374 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00410 672 Gene3D Phosphorylase Kinase; domain 1 348 445 - -
Viun4g00410 672 ProSiteProfiles Protein kinase domain profile. 371 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00410 672 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Viun4g00410 672 MobiDBLite consensus disorder prediction 646 672 - -
Viun4g00410 672 PANTHER OS05G0588300 PROTEIN 10 646 - -
Viun4g00410 672 FunFam pollen receptor-like kinase 1 342 445 - -
Viun4g00410 672 FunFam Probable inactive receptor kinase At1g48480 446 649 - -
Viun4g00410 672 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00410 Viun-Chr4 2744609 2747992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00410 24 642 Receptor kinase-like Gene Family AT1G48480 61.049 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun4g00410 Pkinase 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00410 - - vum:124840126 1034.63