Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00406 ATGCAGTGGTCATTCCCAAACAAGGTTTCGGTTCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCCAGAAAGACTATTCTTGATCCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGCCTCAGAGAAATTTGTCCATAGGCAAGCATAGTGCAAGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGCATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAATCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGATCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAAATCCTCTGGCATGGCTACTCAGCTCACCATTTTCTATGCTGGTTCCGTATGTGTTTATAATGACATAACTCCCGAGAAGGCCATGGATATCATGTTAATGGCTGGAAATGGGTCTGCTCCAACTCAGAAAATGGCAGTTTCCACAGCTAAATTGCAGACACCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCCTATTCTCCCTCACCCCTCCCAAGCCCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGGAGGATCTTCTAGCTACAATAAGCTTGCAATAATAAGACCAATAGTAGGACCTTCAATTGCCCCTACTAACCATTTGGAGTCACCTATTATTGTTGGTTCTGGAGGATCTGCATCTAAGGAAAATGCTCAACCAGTATACTTGCCTCAGGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACAAGTACATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCAGCTCATCTGGATCAGACAGTGTTAGTTTCTCCTTGAACTTCTCTGGATCCTGTTCTCTACCAGCCACCAACTAG 1074 0.432 MQWSFPNKVSVLPQFLSFKTNQEDRPRKTILDPLASSGYMNMPSKEAFESNQKPFLGVPQRNLSIGKHSARNKQGRTVYPMQCIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYAGSVCVYNDITPEKAMDIMLMAGNGSAPTQKMAVSTAKLQTPVSIPSKDDGFIMSQSYSPSPLPSPLSLTSHVNSQPGGGSSSYNKLAIIRPIVGPSIAPTNHLESPIIVGSGGSASKENAQPVYLPQARKASLARFLEKRKERMTSTSPYFYMSKKSSESSSSGSDSVSFSLNFSGSCSLPATN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00406 357 ProSiteProfiles Tify domain profile. 161 196 IPR010399 -
Viun4g00406 357 SMART tify_2 161 196 IPR010399 -
Viun4g00406 357 Pfam Jas motif 299 323 IPR018467 -
Viun4g00406 357 Pfam tify domain 165 195 IPR010399 -
Viun4g00406 357 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 335 IPR040390 -
Viun4g00406 357 MobiDBLite consensus disorder prediction 320 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00406 Viun-Chr4 2694013 2697929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00406 1 341 Tify Gene Family AT3G17860 38.333 2.46e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun4g00406 tify 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00406 K13464 - gmx:100807288 509.605