Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00405 ATGGAGAGAGAATTTTTTGGCTTGAGTTCCAAAAACATGAAAGATGATGCTGCTAACAAGCCAAAAGACACAGTGAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCGGTTCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCCAGAAAGACTATTCTTGATCCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGCCTCAGAGAAATTTGTCCATAGGCAAGCATAGTGCAAGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGCATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAATCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGATCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAAATCCTCTGGCATGGCTACTCAGCTCACCATTTTCTATGCTGGTTCCGTATGTGTTTATAATGACATAACTCCCGAGAAGGCCATGGATATCATGTTAATGGCTGGAAATGGGTCTGCTCCAACTCAGAAAATGGCAGTTTCCACAGCTAAATTGCAGACACCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCCTATTCTCCCTCACCCCTCCCAAGCCCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGGAGGATCTTCTAGCTACAATAAGCTTGCAATAATAAGACCAATAGTAGGACCTTCAATTGCCCCTACTAACCATTTGGAGTCACCTATTATTGTTGGTTCTGGAGGATCTGCATCTAAGGAAAATGCTCAACCAGTATACTTGCCTCAGGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACAAGTACATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCAGCTCATCTGGATCAGACAGTGTTAGTTTCTCCTTGAACTTCTCTGGATCCTGTTCTCTACCAGCCACCAACTAG 1161 0.4298 MEREFFGLSSKNMKDDAANKPKDTVRSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTILDPLASSGYMNMPSKEAFESNQKPFLGVPQRNLSIGKHSARNKQGRTVYPMQCIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYAGSVCVYNDITPEKAMDIMLMAGNGSAPTQKMAVSTAKLQTPVSIPSKDDGFIMSQSYSPSPLPSPLSLTSHVNSQPGGGSSSYNKLAIIRPIVGPSIAPTNHLESPIIVGSGGSASKENAQPVYLPQARKASLARFLEKRKERMTSTSPYFYMSKKSSESSSSGSDSVSFSLNFSGSCSLPATN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00405 386 Pfam Jas motif 328 352 IPR018467 -
Viun4g00405 386 MobiDBLite consensus disorder prediction 349 386 - -
Viun4g00405 386 Pfam tify domain 194 224 IPR010399 -
Viun4g00405 386 ProSiteProfiles Tify domain profile. 190 225 IPR010399 -
Viun4g00405 386 MobiDBLite consensus disorder prediction 1 22 - -
Viun4g00405 386 SMART tify_2 190 225 IPR010399 -
Viun4g00405 386 MobiDBLite consensus disorder prediction 1 29 - -
Viun4g00405 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 130 364 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00405 Viun-Chr4 2694013 2700411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00405 30 370 Tify Gene Family AT3G17860 38.333 3.37e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun4g00405 tify 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00405 K13464 - gmx:100807288 552.362