Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00383 ATGAAGGAATTGGATTCAATACCAAAGACTCTGATGGAAGATCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGCGGTGTCAACCTAGCCGTTCGTGATGTCCGAAGCAGTGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTGTCATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATTATAGATCCGAATCACCTTGTTAAACTGACTGTGTTTGATCATGACACCTTCAGCAAAGATGACAGAATGGGAGATGCAGAATTTGAGATCTTTCCCTTTATGGAAGCCTTGAAGAGCAACTTAAGTGGCATTCCAAGTGGTACTGTAATCAAAAGAATACAACCAAGCAAGGAGAACTTCCTGGCTGATGAGAGCTGCATCACTTATGTGAATGGCAAGGTTGTGCAAGATATGATCCTTAGATTGCAAAATGTGGAGTGTGGTGAAGTGGAACTTCAGTTGCAGTGGATTGATCTTCCTGCTGCTAAGGGTGTATGA 531 0.4275 MKELDSIPKTLMEDLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMFNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHLVKLTVFDHDTFSKDDRMGDAEFEIFPFMEALKSNLSGIPSGTVIKRIQPSKENFLADESCITYVNGKVVQDMILRLQNVECGEVELQLQWIDLPAAKGV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00383 176 ProSiteProfiles C2 domain profile. 3 117 IPR000008 -
Viun4g00383 176 SMART C2_3c 18 113 IPR000008 -
Viun4g00383 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
Viun4g00383 176 Pfam C2 domain 17 101 IPR000008 -
Viun4g00383 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 102 IPR035892 -
Viun4g00383 176 Gene3D C2 domain 13 174 IPR035892 -
Viun4g00383 176 CDD C2_ArfGAP 16 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00383 Viun-Chr4 2512656 2515052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00383 49 176 C2H2 Transcription Factor Family AT1G70790 58.462 1.69e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00383 - - gmx:100810504 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03063 1 38987617 38989973 Viun4g00383 4 2512656 2515052 ECH
Viun4g00383 4 2512656 2515052 Viun4g00383 4 2512656 2515052 ECH
Viun3g00055 3 244907 246473 Viun4g00383 4 2512656 2515052 PCT