Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00377 ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCAGCCACCGCCGTCCCGTTCCCGGCCGACACCAACGACCACCTCCCGGCGCCCATTGCGGAGCCGCCGTCAAATCACCCGCCCTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGATGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAAGGACCAGCTTCCTCCGAATCACTCCGCCTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCGCTGCTGCTGCTGCAGAGGAACCCGTGCCTGGGCCCTCTCCTTCAACCGTTCCCAGGCCCAGAGGTCGGCCTCGAAAGGCCCAAACCCCTGTCCACAACCTGCCCCAGCCTCTGGTGCAGGCCCAGGATGCTGTAATCCCATCGGTTCAGCAGAATGCTGAGCCTGTCTGGGCGGCGCTTGGGCTTGCTGACGAGCCTGTGCAAGCTGAGACCCCCAAGAAGCGTCCGGGCCGACCGAAGAAATTAGCCACCGGAGCCACTGGAACGGGGCGGAGAGGCCGTCCTGTTGGGTCTGGAAAAGGCCCTGGTCGACCTCCTAAGCCCAAACCCGTCGCTTCGGACACTTCTGCTTCTGCCTCTGCAGGGCCGAAGAGACGCCCGGGCCGCCCGCCTAAGAACCAGACCCAAGCAACTCAAATTCCGTTTGCTCCATCTACACCTACTGCTGGTGCTGGTGCTGGTGCTGAGGATGGTGCTGAGGCTGGGGCTGTTGTGCCGGGCTCAGAGCCCGTGGAAGAACAGGTTCCTGCAGGTGATGGAATTTTACTCGGGCCTAGAGTCCGTGGTCGACCAAAGAAGTTTGCTGATGAGATGATTCCCTCCGGCCGAGGCAGGGGAAGGGGTCGTGGACGTGGACGTGGACGTGGGCGTGGTGGTAGTTTGCTGTTGGCAAGACCCGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGGGTCAACTTTTGATGGACCTCCACAAAATGCTGCTAATGAAGAACTCAAAAGGAAGCTCGAACACTTTCAATCAAAAGTGAAGGAATCCCTGGCAGTGATTAAGCCTCACTTCAACCATCAAAGTCCAGTCACTGCAATTGCAGCTATTCAAGATTTGGAAGAGCTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACAATTCCTCTGCAACAGGAGGAGCAGCCACCTCAGGCACCACCGGCGCAGCCACCACAGCAACAACCTCCACCACCGCAGCAGCAGCAGCAGGCGCCACCTCAGCCACACCTGGCACCGGCACCACTGCAACCTCAGACACAGCTATTTCAGCAACCATTTCCGTCATTTCAGCTGCAGCAGCAGCCATTCCATCATCAGCAGACACAGCTGCAGTTCCAGCAGCCACCGCAGCAGCACCAGCTGTTCCAGGCACCACCGTCGCACCACCAACAGTTTCATCCTTAG 1539 0.5874 MEPSSISPPPAPPATAVPFPADTNDHLPAPIAEPPSNHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYKDQLPPNHSALLTQHLTRMKTSGMLVMVKKSYALPRSAAAAAAAAAAEEPVPGPSPSTVPRPRGRPRKAQTPVHNLPQPLVQAQDAVIPSVQQNAEPVWAALGLADEPVQAETPKKRPGRPKKLATGATGTGRRGRPVGSGKGPGRPPKPKPVASDTSASASAGPKRRPGRPPKNQTQATQIPFAPSTPTAGAGAGAEDGAEAGAVVPGSEPVEEQVPAGDGILLGPRVRGRPKKFADEMIPSGRGRGRGRGRGRGRGRGGSLLLARPGVRSVGRPRKGSTFDGPPQNAANEELKRKLEHFQSKVKESLAVIKPHFNHQSPVTAIAAIQDLEELGTMDLNAPLRDETIPLQQEEQPPQAPPAQPPQQQPPPPQQQQQAPPQPHLAPAPLQPQTQLFQQPFPSFQLQQQPFHHQQTQLQFQQPPQQHQLFQAPPSHHQQFHP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00377 512 SUPERFAMILY "Winged helix" DNA-binding domain 34 117 IPR036390 -
Viun4g00377 512 MobiDBLite consensus disorder prediction 459 512 - -
Viun4g00377 512 Gene3D - 34 119 IPR036388 -
Viun4g00377 512 MobiDBLite consensus disorder prediction 1 17 - -
Viun4g00377 512 SMART AT_hook_2 237 249 IPR017956 GO:0003677
Viun4g00377 512 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Viun4g00377 512 SMART AT_hook_2 341 353 IPR017956 GO:0003677
Viun4g00377 512 SMART AT_hook_2 298 310 IPR017956 GO:0003677
Viun4g00377 512 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Viun4g00377 512 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun4g00377 512 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun4g00377 512 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun4g00377 512 PRINTS Histone H5 signature 126 140 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun4g00377 512 MobiDBLite consensus disorder prediction 116 148 - -
Viun4g00377 512 MobiDBLite consensus disorder prediction 1 39 - -
Viun4g00377 512 Coils Coil 362 382 - -
Viun4g00377 512 MobiDBLite consensus disorder prediction 302 317 - -
Viun4g00377 512 PANTHER HISTONE H1 17 247 - -
Viun4g00377 512 PRINTS AT-hook-like domain signature 296 306 IPR017956 GO:0003677
Viun4g00377 512 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Viun4g00377 512 PRINTS AT-hook-like domain signature 235 246 IPR017956 GO:0003677
Viun4g00377 512 MobiDBLite consensus disorder prediction 181 363 - -
Viun4g00377 512 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun4g00377 512 MobiDBLite consensus disorder prediction 408 512 - -
Viun4g00377 512 MobiDBLite consensus disorder prediction 244 258 - -
Viun4g00377 512 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun4g00377 512 FunFam Histone H1.2 34 115 - -
Viun4g00377 512 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun4g00377 512 MobiDBLite consensus disorder prediction 425 458 - -
Viun4g00377 512 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00377 Viun-Chr4 2450564 2456183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00377 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 39.394 3.70e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00377 - - vun:114182142 701.049