Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00376 ATGCCTTCCTTTGTAGATTTGCAACTTCAAGGAACATCAATCTCAGGTAGTGGTACGTGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCAAACTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACTGGCAAATCAAGTTCAGATTTTGAAGTTATAGATAGCAATTTTGTTCGCAAGCTTGCCATGTTTGTGGCTGATTATATGGGTGGACAAGTTGGAGATCATGAAAGTATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTCAAAGCAACCCTTGGTAGCATGTTTTTGCCACTTGGTTCTCTAACTATTGGATTGTCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTGAAGGGGCTGCAATATACCAATTCCGATGATGTGGCGATAAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTAATGGCAGACCCTGGAACTCTTATTCCAGCTGATGCAACTGGATCACAGATAGAGTGCGATGAATCATCGTATGTGGCCAGTCCTTCATCTAGAGACCTTGATTCCTCACATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATACGAAGAAACTTTGGATTTGGGGATGTTGGACAAAGCAAACAGATCAAAACATTTTCCTCATACAGGTAAAGAATCTGATGTAAGCATGCCCTCCACGGTAAAGGAAGAATCAATACAAACCTTGAATGAATTTAAAAGCCCTCGCAATGTTGATGAGAAGATCACTGAGCAGGAAGCTCATGGCAGACCTAATTATCCACATGTACATGGAAGATCTCCATCTTGGACTGAAGGGATCAGTTCTCCTGCAGTACGTAAGATGAAAGTCAAAGATGTTTCTCTATACATGATCGATGCTGCAAAGGAGAACCCTCACTTAGCCCAGAGGCTTCACGACGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTATGATGATGACTCAAGTTCCTCAGCTGAGGCCAACTTTCCAACAGAAGAAAAAGATGAACATAAGCAGCGAAGTGGACATAAAGAAGCTGAGCTTGATGGTAATCTTTCTCAAGCTCGAATTTTGCCTCCTTTGGCACAAAATAGAGTCCAGAACAAACATGTAGAAGGTTTAGGAATCAACCTTCCTTTTGTACAGCATATACAACCTCAGGTAAAATATGGTCAAAATGTTCCTGTTGCTGCTGCTGCAGCTGCCGCTGCTGCCGTTGTTGCATCTTCTATGGTAGCTGCGGTGGCAAAATCTAGCATTGACTCAAACATAGATCTTCCCGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAGCAACCACAGCTGCTGTCAGTAAACAGTATGAACAAGGCAGTCGAAGTGATGGAGATACAGACAGTGCTGGTGACCTGAAGGGTAGTGGTGATGGAGAACATATAGCTTTAGGAGCAAATTCAGAAGGTGAGCGAAGATCTGATAGATCAGTGGTAAGTAACGATAGCACAAAATCTGATTCTGCATTAGATGATCATGATGTTGCTGAGGTTGACATTCCATGGGAGGAAATCTCACTCGGGGAGCGTATCGGACTTGGATCATATGGGGAGGTGTATCGTGGTGAATGGCGTGGAACAGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAGTTCAAAACTGAAGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTACTTCATAGACCAAACAGTCAACTAGATGAGCGAAGGCGTTTAAAGATGGCTATTGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCACTCCAGTGATAGTGCATCGGGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTGAAGGTATGTGATTTTGGCTTATCCCGAATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACGGCCGAGTGGATGGCTCCTGAGGTGTTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTATATAGCTTTGGGGTCATATTATGGGAGCTCTCCACTTTGCAGCAACCCTGGGGTGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAGCATCGCCGTCTTGACATTCCTGATAATGTGGACCCTACCATAGCAGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTACATTTGTTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGACAGTTACTGGTTCTCAAGTGCCTCGACCAAGTGCATCGGGGAAGCATGAGAGGGGTCAGTCATCGCGTGTTATAGAAGACCCAGCATGA 2478 0.4346 MPSFVDLQLQGTSISGSGTWEAVLVNRAADSNLLKLVQKAQELTGKSSSDFEVIDSNFVRKLAMFVADYMGGQVGDHESMTRAWRSLSYSLKATLGSMFLPLGSLTIGLSRHRALLFKVLADSLGIPCRLVKGLQYTNSDDVAINFVKIDDGREYIVDLMADPGTLIPADATGSQIECDESSYVASPSSRDLDSSHVASSSSGVGSSYEETLDLGMLDKANRSKHFPHTGKESDVSMPSTVKEESIQTLNEFKSPRNVDEKITEQEAHGRPNYPHVHGRSPSWTEGISSPAVRKMKVKDVSLYMIDAAKENPHLAQRLHDVLLESGVVAPPNLFSEIYDDDSSSSAEANFPTEEKDEHKQRSGHKEAELDGNLSQARILPPLAQNRVQNKHVEGLGINLPFVQHIQPQVKYGQNVPVAAAAAAAAAVVASSMVAAVAKSSIDSNIDLPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTDSAGDLKGSGDGEHIALGANSEGERRSDRSVVSNDSTKSDSALDDHDVAEVDIPWEEISLGERIGLGSYGEVYRGEWRGTEVAVKRFLDQDISGESLEEFKTEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLKMAIDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPTIADIIRKCWQTDPKLRPTFVEILAALKPLQKTVTGSQVPRPSASGKHERGQSSRVIEDPA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00376 825 Gene3D Phosphorylase Kinase; domain 1 532 616 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 798 825 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 475 489 - -
Viun4g00376 825 FunFam Serine/threonine-protein kinase isoform 1 530 617 - -
Viun4g00376 825 ProSiteProfiles Protein kinase domain profile. 539 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00376 825 Pfam Ethylene-responsive protein kinase Le-CTR1 1 167 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 338 374 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 180 207 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 258 287 - -
Viun4g00376 825 Pfam Protein tyrosine and serine/threonine kinase 540 790 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 MobiDBLite consensus disorder prediction 470 526 - -
Viun4g00376 825 ProSitePatterns Protein kinases ATP-binding region signature. 545 566 IPR017441 GO:0005524
Viun4g00376 825 PRINTS Tyrosine kinase catalytic domain signature 762 784 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 PRINTS Tyrosine kinase catalytic domain signature 718 740 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 PRINTS Tyrosine kinase catalytic domain signature 699 709 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 PRINTS Tyrosine kinase catalytic domain signature 652 670 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 PRINTS Tyrosine kinase catalytic domain signature 613 626 IPR001245 GO:0004672|GO:0006468
Viun4g00376 825 Gene3D Transferase(Phosphotransferase) domain 1 618 803 - -
Viun4g00376 825 CDD STKc_MAP3K-like 545 791 - -
Viun4g00376 825 FunFam Serine/threonine-protein kinase CTR1 618 801 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 798 814 - -
Viun4g00376 825 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 238 798 - -
Viun4g00376 825 MobiDBLite consensus disorder prediction 258 273 - -
Viun4g00376 825 SMART serkin_6 539 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00376 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Viun4g00376 825 MobiDBLite consensus disorder prediction 499 526 - -
Viun4g00376 825 SUPERFAMILY Protein kinase-like (PK-like) 524 790 IPR011009 -
Viun4g00376 825 MobiDBLite consensus disorder prediction 350 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00376 Viun-Chr4 2428739 2437388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00376 7 809 MAP Kinase Kinase Kinase AT1G73660 63.980 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun4g00376 PK_Tyr_Ser-Thr 3.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00376 - - vra:106769971 1482.62