Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00375 ATGAAGAACCTTCTTAAGAAGCTTCATATCATGTCTAACAGATCAGAGAATGAACAAGGGTCTTCTTCATCCAAGGGTAGCAAGTCCAATCTTGGTTCATCTTCATCTTCCAAGAAGATTTTACGCTCAAAGTCCACTCAAAGTTCTGAGCAAAAGCCCTTATCTGGGCTCTCGAGTTGGTTGCATTCAGTTGCCAATAGGCAGAGTTCTAGTCCTCCTCCATCTTTGAGCCAGGCAAGGGGCGAGAGAATGGAGCCATCTGATGCAGTTACCAGTGGTGGTTTGGATGTTGTGTCAGATTCAGCTAGGCTTGATTCAGCTTCTAGTGCTTCCAGGGATCCTGAAGTGGAGGAAGAGTATCAGATACAGTTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAAGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGGTTATACACCAGCTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTTGGATGGTTTCTACGATCTGTATGGGAACTTATCTGGGTCAAACCCTGCAAGAATGCCTTCCTTTGTAGATTTGCAACTTCAAGGAACATCAATCTCAGGTAGTGGTACGTGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCAAACTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACTGGCAAATCAAGTTCAGATTTTGAAGTTATAGATAGCAATTTTGTTCGCAAGCTTGCCATGTTTGTGGCTGATTATATGGGTGGACAAGTTGGAGATCATGAAAGTATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTCAAAGCAACCCTTGGTAGCATGTTTTTGCCACTTGGTTCTCTAACTATTGGATTGTCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTGAAGGGGCTGCAATATACCAATTCCGATGATGTGGCGATAAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTAATGGCAGACCCTGGAACTCTTATTCCAGCTGATGCAACTGGATCACAGATAGAGTGCGATGAATCATCGTATGTGGCCAGTCCTTCATCTAGAGACCTTGATTCCTCACATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATACGAAGAAACTTTGGATTTGGGGATGTTGGACAAAGCAAACAGATCAAAACATTTTCCTCATACAGGTAAAGAATCTGATGTAAGCATGCCCTCCACGGTAAAGGAAGAATCAATACAAACCTTGAATGAATTTAAAAGCCCTCGCAATGTTGATGAGAAGATCACTGAGCAGGAAGCTCATGGCAGACCTAATTATCCACATGTACATGGAAGATCTCCATCTTGGACTGAAGGGATCAGTTCTCCTGCAGTACGTAAGATGAAAGTCAAAGATGTTTCTCTATACATGATCGATGCTGCAAAGGAGAACCCTCACTTAGCCCAGAGGCTTCACGACGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTATGATGATGACTCAAGTTCCTCAGCTGAGGCCAACTTTCCAACAGAAGAAAAAGATGAACATAAGCAGCGAAGTGGACATAAAGAAGCTGAGCTTGATGGTAATCTTTCTCAAGCTCGAATTTTGCCTCCTTTGGCACAAAATAGAGTCCAGAACAAACATGTAGAAGGTTTAGGAATCAACCTTCCTTTTGTACAGCATATACAACCTCAGGTAAAATATGGTCAAAATGTTCCTGTTGCTGCTGCTGCAGCTGCCGCTGCTGCCGTTGTTGCATCTTCTATGGTAGCTGCGGTGGCAAAATCTAGCATTGACTCAAACATAGATCTTCCCGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAGCAACCACAGCTGCTGTCAGTAAACAGTATGAACAAGGCAGTCGAAGTGATGGAGATACAGACAGTGCTGGTGACCTGAAGGGTAGTGGTGATGGAGAACATATAGCTTTAGGAGCAAATTCAGAAGGTGAGCGAAGATCTGATAGATCAGTGGTAAGTAACGATAGCACAAAATCTGATTCTGCATTAGATGATCATGATGTTGCTGAGGTTGACATTCCATGGGAGGAAATCTCACTCGGGGAGCGTATCGGACTTGGATCATATGGGGAGGTGTATCGTGGTGAATGGCGTGGAACAGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAGTTCAAAACTGAAGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTACTTCATAGACCAAACAGTCAACTAGATGAGCGAAGGCGTTTAAAGATGGCTATTGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCACTCCAGTGATAGTGCATCGGGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTGAAGGTATGTGATTTTGGCTTATCCCGAATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACGGCCGAGTGGATGGCTCCTGAGGTGTTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTATATAGCTTTGGGGTCATATTATGGGAGCTCTCCACTTTGCAGCAACCCTGGGGTGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAGCATCGCCGTCTTGACATTCCTGATAATGTGGACCCTACCATAGCAGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTACATTTGTTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGACAGTTACTGGTTCTCAAGTGCCTCGACCAAGTGCATCGGGGAAGCATGAGAGGGGTCAGTCATCGCGTGTTATAGAAGACCCAGCATGA 3060 0.4382 MKNLLKKLHIMSNRSENEQGSSSSKGSKSNLGSSSSSKKILRSKSTQSSEQKPLSGLSSWLHSVANRQSSSPPPSLSQARGERMEPSDAVTSGGLDVVSDSARLDSASSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPGYTPAEVVAYRYWNYNALGYDDKILDGFYDLYGNLSGSNPARMPSFVDLQLQGTSISGSGTWEAVLVNRAADSNLLKLVQKAQELTGKSSSDFEVIDSNFVRKLAMFVADYMGGQVGDHESMTRAWRSLSYSLKATLGSMFLPLGSLTIGLSRHRALLFKVLADSLGIPCRLVKGLQYTNSDDVAINFVKIDDGREYIVDLMADPGTLIPADATGSQIECDESSYVASPSSRDLDSSHVASSSSGVGSSYEETLDLGMLDKANRSKHFPHTGKESDVSMPSTVKEESIQTLNEFKSPRNVDEKITEQEAHGRPNYPHVHGRSPSWTEGISSPAVRKMKVKDVSLYMIDAAKENPHLAQRLHDVLLESGVVAPPNLFSEIYDDDSSSSAEANFPTEEKDEHKQRSGHKEAELDGNLSQARILPPLAQNRVQNKHVEGLGINLPFVQHIQPQVKYGQNVPVAAAAAAAAAVVASSMVAAVAKSSIDSNIDLPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTDSAGDLKGSGDGEHIALGANSEGERRSDRSVVSNDSTKSDSALDDHDVAEVDIPWEEISLGERIGLGSYGEVYRGEWRGTEVAVKRFLDQDISGESLEEFKTEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLKMAIDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPTIADIIRKCWQTDPKLRPTFVEILAALKPLQKTVTGSQVPRPSASGKHERGQSSRVIEDPA 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00375 1019 SMART serkin_6 733 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00375 1019 MobiDBLite consensus disorder prediction 1 118 - -
Viun4g00375 1019 Gene3D Phosphorylase Kinase; domain 1 726 810 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 992 1008 - -
Viun4g00375 1019 CDD STKc_MAP3K-like 739 985 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 693 720 - -
Viun4g00375 1019 SUPERFAMILY Protein kinase-like (PK-like) 718 984 IPR011009 -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 544 565 - -
Viun4g00375 1019 ProSitePatterns Protein kinases ATP-binding region signature. 739 760 IPR017441 GO:0005524
Viun4g00375 1019 Gene3D Transferase(Phosphotransferase) domain 1 812 997 - -
Viun4g00375 1019 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 992 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 452 467 - -
Viun4g00375 1019 PRINTS Tyrosine kinase catalytic domain signature 807 820 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 PRINTS Tyrosine kinase catalytic domain signature 846 864 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 PRINTS Tyrosine kinase catalytic domain signature 893 903 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 PRINTS Tyrosine kinase catalytic domain signature 956 978 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 PRINTS Tyrosine kinase catalytic domain signature 912 934 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 FunFam Serine/threonine-protein kinase isoform 1 724 811 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 669 683 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 532 568 - -
Viun4g00375 1019 Pfam Ethylene-responsive protein kinase Le-CTR1 157 361 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 14 77 - -
Viun4g00375 1019 Pfam Protein tyrosine and serine/threonine kinase 734 984 IPR001245 GO:0004672|GO:0006468
Viun4g00375 1019 MobiDBLite consensus disorder prediction 664 720 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 992 1019 - -
Viun4g00375 1019 MobiDBLite consensus disorder prediction 452 481 - -
Viun4g00375 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
Viun4g00375 1019 ProSiteProfiles Protein kinase domain profile. 733 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00375 1019 MobiDBLite consensus disorder prediction 374 401 - -
Viun4g00375 1019 FunFam Serine/threonine-protein kinase CTR1 812 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00375 Viun-Chr4 2428739 2438295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00375 1 1003 MAP Kinase Kinase Kinase AT1G73660 62.022 0.0 1120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun4g00375 PK_Tyr_Ser-Thr 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00375 - - vra:106769971 1771.13