Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00371 ATGTGGATGGTTGGTGACAATGAAGGTGGTGAGTTCAGTATGGTTGATCATTCTTTCAGTGGAAGGAAACTCAGACCCCTCATGCCAAGGCCAATAACTTCTTCTTCTTCTTTCACACCACCACCAACAACCACTCTTAGCTTGACTCACCCTCATGCCAATGATTTCCCTTCACACTATGATTATCACCATCTTGCCTCAGTGGCAGAACAAAACAAGAGAGAACAGTTCAATGGTGCAGCACCTGTTGTGGTGAGCTCAAGGTGGAATCCAACGCGAGAGCAACTAAGAGCCCTTGAAGAGTTGTACAGAAGAGGAACAAGAACACCATCTGCTGAGCAAATCCAACACATCACTTCACAGCTTAGAAAGTTTGGTAACATCGAAGGCAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCCAGGGAAAGGCAAAAACGTCGCCGCCAAATGGAATCAGAGGCTGGAACTCCTGAGAAGAAAGATTCAGCTGCAGGTAGGGCAGTGTTTGAAGTTAAACAGATCAAGAATTGGACACCCTCAACAAACTGCAGTACTGTTGCAGAGGAATCTGTTTCAACGCAGAGGACTGCAAAAGCAGTGGGTGAAGAGAGTAGAACAGTTGGATGGCTCCAATTCGATGAAGGAAGAAACCTTTTGGAGAGGAATGCCACGTGGCATGTGATGCAGTTACCTTGTCCTTCTCCAACTGCACCCTCTTCAGCTATTACAACAACCACAGTAACAAGAACAAAAATGGAGCCTAACCTCATTAAGACACATGATCTCAGCTTTTTCATTTCACCCCAGAGGGAAAACAGTGTTATATACTTAAGCAGTAGCAGTAGTACCAGTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAGTTTTTCCCATTAAGGAGTGGTGGTGGTGGTGATGATGCTAGCAGTGACAGCATGAGGGATAAAGAGACAGAGATATCAGCTTCACCAATGAATTGCAATAACTTCACCCCAAGCCAGTTTTTTGAGTTCCTTCCTATGAAGGAGTGA 1041 0.4467 MWMVGDNEGGEFSMVDHSFSGRKLRPLMPRPITSSSSFTPPPTTTLSLTHPHANDFPSHYDYHHLASVAEQNKREQFNGAAPVVVSSRWNPTREQLRALEELYRRGTRTPSAEQIQHITSQLRKFGNIEGKNVFYWFQNHKARERQKRRRQMESEAGTPEKKDSAAGRAVFEVKQIKNWTPSTNCSTVAEESVSTQRTAKAVGEESRTVGWLQFDEGRNLLERNATWHVMQLPCPSPTAPSSAITTTTVTRTKMEPNLIKTHDLSFFISPQRENSVIYLSSSSSTSEDDNCVESQTLQFFPLRSGGGGDDASSDSMRDKETEISASPMNCNNFTPSQFFEFLPMKE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00371 346 SUPERFAMILY Homeodomain-like 87 149 IPR009057 -
Viun4g00371 346 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 70 341 IPR044555 GO:0003700|GO:0099402
Viun4g00371 346 MobiDBLite consensus disorder prediction 300 329 - -
Viun4g00371 346 ProSiteProfiles 'Homeobox' domain profile. 92 147 IPR001356 GO:0003677
Viun4g00371 346 MobiDBLite consensus disorder prediction 144 166 - -
Viun4g00371 346 FunFam WUSCHEL-related homeobox 4 86 153 - -
Viun4g00371 346 Gene3D - 85 147 - -
Viun4g00371 346 MobiDBLite consensus disorder prediction 148 166 - -
Viun4g00371 346 Pfam Homeodomain 87 146 IPR001356 GO:0003677
Viun4g00371 346 SMART HOX_1 84 151 IPR001356 GO:0003677
Viun4g00371 346 CDD homeodomain 88 148 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00371 Viun-Chr4 2393455 2396263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00371 1 345 Wox Gene Family AT3G18010 38.422 4.35e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun4g00371 Homeodomain 2.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00371 - - gmx:100819541 478.404