Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00370 ATGACTCCTCGCGTCGACGATTTCGAAAACGACAATCTCTCATCAACCGACGACGATGGTGACGACGGCTTCAAGGATGATATGGCCGCGCTCTCCCGAGCCTGCATGATCGTCGTCCCTGGCTCCGATGATAATTTCGCAGCTGAAGACGATGTTCCGTCGTTGGACCCTCTCACTGACGCCGGCACTGCCATTGTTCCCGTCGCCACCGACTCGGACTCCGACGACCAGGACGACCTCGAATGTCTTAAGAGAGTGCAGAGTGTATACCAGCCTCTGTCCGTTCTTCCGCCGCTTGAGTCGGCGTTGGCCGTGTCTGACGACGACGATGACGTGGATGACCTCGAGACAGTGCGCGCCATCATGAAAAGGTTTGGCGACTACAACGAAGGTGGGATAAAAAAGTTGGTTGCGGAGGATCAGATCTCCAGCATGGGCTGTGAGGGTGACATCGCTAATGGCTCGACCCATTTCGATTCTGATGGTGGTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCTGATGCCTGGGAGTCATCTAGATTACAACAGAAAAGATTGAGCTGTCCTCCTGTTGTACAGTGTTTTATTGACGCCATTAAGACAAATAGGGATTTGCAGAGATTTATTAGAGGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAAAATTAAAGTTCTTAAGGACTTCCAGGCTTCATGCACTAGAAGAACAGGGAACGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCTGCAAAAAGGTCTCCAAAGAAGTTTAAGAAACGTAGAAAGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCGTGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCACTGGATAGGAAAAAATGGTCTAAGGCAGACAGGGGAAATCTTTTTAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTCTCACTTTCACTTGATAGAACAAGTTCAGAGGGCTTGCTTGGAGATGCTGATGACATGGATAATATAATGGCATCCGTTAAGGATCTTGAAGTCACACCAGAGAGGATTAGAAATTTTTTGCCTAAAGTTAATTGGGATCTGATAGCTTCTATGTATGTTGGTGGCCATACTGGTGCAGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGGTCAACCAAGGTGCATGGACTAAGGAAGAGGACAGGTCCCTTTTATTTATTGTCCAAGATACGGGCATCAAGAACTGGTTCAATATTGCTTCATCATTGGGCACAAGCAGGACTCCATTTCAATGTTTGTCACGATTCCAAAGGAGCTTAAATCCTGCCATGCTAAATAGTGAATGGACTGAGGAAGAGGATGCTCAACTATGTTCTGCAGTGACATATTTTGGTAATAGCAATTGGCAATGCGTGGCTTCTGTTTTAGAACGTCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTCTGTCCTGAGAAGAAAGGGAGCTTTACACAAGAGGAAGATATACGGTTAAGAGTAGCAGTCATGCTTTTTGGGCGCAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAATGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAAATTAGAAGATGCAATTGCAAAGCATGGGTATTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATTATTGGTAGTAACTTCGTTGATCGAGAATCTGAACGCCCAACCATTACACTTAATGACTTTCTACCTTTACTTGCGTTAGCTCCAAAATCTGATGTTGGTTCTTCAAACATCCGGAAGAAGCGCAAGTCAAGCAATGTTCCCAAGAAAAAGAGTTCTAAGAAAGGTGCAAAAAGAACTAAACGTACCAAAGAAGTACGAGATACAGAGGTGTATCACGACGATGAGTTCTACTCCGTCTCTGCACACAGCAATCTTCCGCAGAAGACGATGTCCAAGAGACGCACAAAAAGTAGTCGAAATTCTCCCCAGAAATTAGTGGATATCTCTTGTAGTGACAAGGTCACTTCCATTGAGGTTTCAGAAAACCAGTCTTCCTGTATCTCCAATTCTGAAAATCAAGATTCAGACAGCATAACCCTTGCATGTTTTTTACGCAACAAATCAAATGAGATATTATCTAGATTTACCAAACGTTTAAGTCAGACTTCCTTCGCTAGGATTACTGATGTTCCTGAGCAGGTTGAAAGTCAAAACCCATCTGATGATCAAGGCGGTTTTTCTCATTCACGCGAGACTGTTGGAACTAAAAATTTGTTAGTGCAGCCGAATATTGCTTCTGATAGACGAGTGAAAAACCAGGACGAAACAAATACTTGGACAAGTGATGATGATGACGACGACGACGACCAGATGACCCTTGCATGCTTTTTGAAAAACAATCCAAAGAAAGAGGGTGACCCTGCCAAATTAAAAACAGGATCTGTATTATTAAATGAAGAACATTGTGCAAGCAAGCCAAGCATCATATCTGATGACAGTGGACCGTCAATGTCAAAGCATGTTGAAGAGATGGAGACTGTTGTACATGGTTGTGTTGCTAAACCAATCCATATCATTGTGGAAGAAAAGGTTGATGAGCATTTTCCTCTTCCTCCCCTCACGCAATACAGGCCAAGGAGGGAGCAAAAACGTCCCTGTAGGTATTTGTAG 2889 0.432 MTPRVDDFENDNLSSTDDDGDDGFKDDMAALSRACMIVVPGSDDNFAAEDDVPSLDPLTDAGTAIVPVATDSDSDDQDDLECLKRVQSVYQPLSVLPPLESALAVSDDDDDVDDLETVRAIMKRFGDYNEGGIKKLVAEDQISSMGCEGDIANGSTHFDSDGGATEELIENIEMQLSDFVESSEPDAWESSRLQQKRLSCPPVVQCFIDAIKTNRDLQRFIRGKLIELEAKIEENKKIRNKIKVLKDFQASCTRRTGNVLSLKKDPRVQLISAKRSPKKFKKRRKVPAMCYGPEENSRVANYRMVLERFPLSLDRKKWSKADRGNLFKGIKQQFQEMVLQLSLSLDRTSSEGLLGDADDMDNIMASVKDLEVTPERIRNFLPKVNWDLIASMYVGGHTGAECESRWLNYEDPLVNQGAWTKEEDRSLLFIVQDTGIKNWFNIASSLGTSRTPFQCLSRFQRSLNPAMLNSEWTEEEDAQLCSAVTYFGNSNWQCVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDIRLRVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLEDAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITLNDFLPLLALAPKSDVGSSNIRKKRKSSNVPKKKSSKKGAKRTKRTKEVRDTEVYHDDEFYSVSAHSNLPQKTMSKRRTKSSRNSPQKLVDISCSDKVTSIEVSENQSSCISNSENQDSDSITLACFLRNKSNEILSRFTKRLSQTSFARITDVPEQVESQNPSDDQGGFSHSRETVGTKNLLVQPNIASDRRVKNQDETNTWTSDDDDDDDDQMTLACFLKNNPKKEGDPAKLKTGSVLLNEEHCASKPSIISDDSGPSMSKHVEEMETVVHGCVAKPIHIIVEEKVDEHFPLPPLTQYRPRREQKRPCRYL 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00370 962 Gene3D - 518 571 - -
Viun4g00370 962 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 15 897 - -
Viun4g00370 962 CDD SANT 418 463 IPR001005 -
Viun4g00370 962 MobiDBLite consensus disorder prediction 674 693 - -
Viun4g00370 962 CDD SANT 574 615 IPR001005 -
Viun4g00370 962 MobiDBLite consensus disorder prediction 715 737 - -
Viun4g00370 962 ProSiteProfiles SANT domain profile. 574 617 IPR017884 -
Viun4g00370 962 Pfam Myb-like DNA-binding domain 419 480 - -
Viun4g00370 962 SMART sant 415 465 IPR001005 -
Viun4g00370 962 SMART sant 468 517 IPR001005 -
Viun4g00370 962 SMART sant 570 618 IPR001005 -
Viun4g00370 962 SMART sant 314 412 IPR001005 -
Viun4g00370 962 SMART sant 519 567 IPR001005 -
Viun4g00370 962 CDD SANT 471 515 IPR001005 -
Viun4g00370 962 MobiDBLite consensus disorder prediction 665 700 - -
Viun4g00370 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 519 565 IPR017930 -
Viun4g00370 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 411 467 IPR017930 -
Viun4g00370 962 CDD SANT 522 565 IPR001005 -
Viun4g00370 962 Pfam Myb-like DNA-binding domain 573 614 IPR001005 -
Viun4g00370 962 Pfam Myb-like DNA-binding domain 520 563 IPR001005 -
Viun4g00370 962 SUPERFAMILY Homeodomain-like 545 617 IPR009057 -
Viun4g00370 962 SUPERFAMILY Homeodomain-like 392 461 IPR009057 -
Viun4g00370 962 ProSiteProfiles Myb-like domain profile. 566 616 IPR001005 -
Viun4g00370 962 ProSiteProfiles Myb-like domain profile. 411 463 IPR001005 -
Viun4g00370 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 472 515 IPR017930 -
Viun4g00370 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 566 620 IPR017930 -
Viun4g00370 962 ProSiteProfiles Myb-like domain profile. 519 565 IPR001005 -
Viun4g00370 962 Gene3D - 573 619 - -
Viun4g00370 962 MobiDBLite consensus disorder prediction 804 861 - -
Viun4g00370 962 Gene3D - 470 517 - -
Viun4g00370 962 Gene3D - 414 463 - -
Viun4g00370 962 MobiDBLite consensus disorder prediction 804 835 - -
Viun4g00370 962 MobiDBLite consensus disorder prediction 1 25 - -
Viun4g00370 962 SUPERFAMILY Homeodomain-like 468 561 IPR009057 -
Viun4g00370 962 ProSiteProfiles Myb-like domain profile. 464 515 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00370 Viun-Chr4 2364990 2372045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00370 199 664 MYB-Related Transcription Factor Family AT3G18100 51.143 3.33e-164 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00370 Myb_DNA-bind_6 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00370 K09422 - gmx:778073 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00370 4 2364990 2372045 Viun4g00370 4 2364990 2372045 ECH