Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00369 ATGTTGCTGCAGCTTCAGAGCTCTTCCAGAGTCAACACAAAACAAGTATCTTTGTTTTGTGTGCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATAAGCTAATCCAGACCCTGAAAGCAGAGAAAATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTATCTCACCTTGGGGTAAAAAATGGTGGGGTTGCAGCAGTGATCACTGAAGATAGTGATCTTATAGCATATGGCTGTCCAGATATTATTTTTAAGATGGACCGAAATGGGAATGGTGAAAGAATACAGTTAAAGAAGGTATTTTCGGCTGAGTTTGGTAGACCTTCGTTTCGGAGTTTCAACATGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCTGTTCTTAAGCTTGAGAAAGGTAACCAAATGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGCATGCTCGAATATATGATACCACTGCCAAAGAACTGAAACACGTGAAGCCTCTTCCACAAAATTTTCTTGAGTCACATGATGGGAATCTCGATTTCTTGGGGCCAGAAATTCCCCCATCTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGAAAGCCTTTGATAAGTCTGAAACTTCTAGATTTCCTCTGCACCCCACTGATCTCCAAAGCTTTGATCAAGTCCAGAAAGTTGAAGTTCCTACACCATCTAGGCCAAAGAATAGCTTCTCAATCATTGCTTCCCAATACACCAGAGAAAATAGTACAGTCACAAGGCTTTTAGATGAAGACAAGTATTCCAATGAAGCCTTGGCACTTGAAAAACTAATCATGCCTTTGGGAACAGTTGGAACAGAAGAAAAGACCATTGTATCTGATAACACTCCTTTGAAGGTTCCTGATAACAATCCATTTAGGATAAGAAAAAATGAGGAAAGATATCTGACAAAGGAGAATGTTGAAAAGATTTCTGTTGCAAGCAGCATGGAATATACTGACTTGTGCATGTCTCCAGATAACTTTCAAGAAGAGGGGTCTGACGGGAATCTCTTAAAGAAGAGGAAATTTCTGAACACTTTATCAGATAAAGTTGAAGCCACCTATGAACCGGTTTCAGTAGTGACTGAAGCAGAAAAATCTGATGTATGTTTGACAGTGGAATCCCCAGAAAGTGTAACTTCTGAGCCTAAGATAATTGCTGATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGGAGTAATAACAACAGAACACTTTTGCATTTCTTTTCTAGAGTGTAA 1428 0.3957 MLLQLQSSSRVNTKQVSLFCVQRAVNITPVMAHKLIQTLKAEKIEFVVAPYEADAQLAYLSHLGVKNGGVAAVITEDSDLIAYGCPDIIFKMDRNGNGERIQLKKVFSAEFGRPSFRSFNMELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGNQMPEDYAKTFQEAVAVFQHARIYDTTAKELKHVKPLPQNFLESHDGNLDFLGPEIPPSIVKSIAEGNLNPSTKKAFDKSETSRFPLHPTDLQSFDQVQKVEVPTPSRPKNSFSIIASQYTRENSTVTRLLDEDKYSNEALALEKLIMPLGTVGTEEKTIVSDNTPLKVPDNNPFRIRKNEERYLTKENVEKISVASSMEYTDLCMSPDNFQEEGSDGNLLKKRKFLNTLSDKVEATYEPVSVVTEAEKSDVCLTVESPESVTSEPKIIADLKGRSESKKKSNRRSNSKKTGSNNNRTLLHFFSRV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00369 475 CDD H3TH_FEN1-like 122 194 - -
Viun4g00369 475 SMART HhH_4 121 154 IPR008918 GO:0003677|GO:0003824
Viun4g00369 475 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 20 448 IPR006084 -
Viun4g00369 475 Gene3D - 3 114 - -
Viun4g00369 475 MobiDBLite consensus disorder prediction 434 466 - -
Viun4g00369 475 FunFam exonuclease 1 117 190 - -
Viun4g00369 475 SUPERFAMILY PIN domain-like 18 134 IPR029060 -
Viun4g00369 475 SMART xpgineu 40 113 IPR006086 GO:0004518
Viun4g00369 475 Gene3D - 117 190 - -
Viun4g00369 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 124 139 IPR006084 -
Viun4g00369 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 39 56 IPR006084 -
Viun4g00369 475 Pfam XPG I-region 43 134 IPR006086 GO:0004518
Viun4g00369 475 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 119 248 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00369 Viun-Chr4 2359974 2363516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00369 22 219 Core DNA Replication Machinery Family AT5G26680 28.019 2.12e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00369 K10746 - gmx:100817932 669.077