Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00367 ATGACGAAGCTCAAAGAAGGGAATGTTGCTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATAAGCTAATCCAGACCCTGAAAGCAGAGAAAATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTATCTCACCTTGGGGTAAAAAATGGTGGGGTTGCAGCAGTGATCACTGAAGATAGTGATCTTATAGCATATGGCTGTCCAGATATTATTTTTAAGATGGACCGAAATGGGAATGGTGAAAGAATACAGTTAAAGAAGGTATTTTCGGCTGAGTTTGGTAGACCTTCGTTTCGGAGTTTCAACATGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCTGTTCTTAAGCTTGAGAAAGGTAACCAAATGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGCATGCTCGAATATATGATACCACTGCCAAAGAACTGAAACACGTGAAGCCTCTTCCACAAAATTTTCTTGAGTCACATGATGGGAATCTCGATTTCTTGGGGCCAGAAATTCCCCCATCTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGAAAGCCTTTGATAAGTCTGAAACTTCTAGATTTCCTCTGCACCCCACTGATCTCCAAAGCTTTGATCAAGTCCAGAAAGTTGAAGTTCCTACACCATCTAGGCCAAAGAATAGCTTCTCAATCATTGCTTCCCAATACACCAGAGAAAATAGTACAGTCACAAGGCTTTTAGATGAAGACAAGTATTCCAATGAAGCCTTGGCACTTGAAAAACTAATCATGCCTTTGGGAACAGTTGGAACAGAAGAAAAGACCATTGTATCTGATAACACTCCTTTGAAGGTTCCTGATAACAATCCATTTAGGATAAGAAAAAATGAGGAAAGATATCTGACAAAGGAGAATGTTGAAAAGATTTCTGTTGCAAGCAGCATGGAATATACTGACTTGTGCATGTCTCCAGATAACTTTCAAGAAGAGGGGTCTGACGGGAATCTCTTAAAGAAGAGGAAATTTCTGAACACTTTATCAGATAAAGTTGAAGCCACCTATGAACCGGTTTCAGTAGTGACTGAAGCAGAAAAATCTGATGTATGTTTGACAGTGGAATCCCCAGAAAGTGTAACTTCTGAGCCTAAGATAATTGCTGATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGGAGTAATAACAACAGAACACTTTTGCATTTCTTTTCTAGAGTGTAA 1413 0.3977 MTKLKEGNVAAASELFQRAVNITPVMAHKLIQTLKAEKIEFVVAPYEADAQLAYLSHLGVKNGGVAAVITEDSDLIAYGCPDIIFKMDRNGNGERIQLKKVFSAEFGRPSFRSFNMELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGNQMPEDYAKTFQEAVAVFQHARIYDTTAKELKHVKPLPQNFLESHDGNLDFLGPEIPPSIVKSIAEGNLNPSTKKAFDKSETSRFPLHPTDLQSFDQVQKVEVPTPSRPKNSFSIIASQYTRENSTVTRLLDEDKYSNEALALEKLIMPLGTVGTEEKTIVSDNTPLKVPDNNPFRIRKNEERYLTKENVEKISVASSMEYTDLCMSPDNFQEEGSDGNLLKKRKFLNTLSDKVEATYEPVSVVTEAEKSDVCLTVESPESVTSEPKIIADLKGRSESKKKSNRRSNSKKTGSNNNRTLLHFFSRV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00367 470 SMART xpgineu 35 108 IPR006086 GO:0004518
Viun4g00367 470 SMART HhH_4 116 149 IPR008918 GO:0003677|GO:0003824
Viun4g00367 470 MobiDBLite consensus disorder prediction 429 461 - -
Viun4g00367 470 FunFam exonuclease 1 112 185 - -
Viun4g00367 470 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 114 243 IPR036279 -
Viun4g00367 470 CDD H3TH_FEN1-like 117 189 - -
Viun4g00367 470 Gene3D - 1 109 - -
Viun4g00367 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 34 51 IPR006084 -
Viun4g00367 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 119 134 IPR006084 -
Viun4g00367 470 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 13 443 IPR006084 -
Viun4g00367 470 Pfam XPG I-region 38 129 IPR006086 GO:0004518
Viun4g00367 470 Gene3D - 112 185 - -
Viun4g00367 470 SUPERFAMILY PIN domain-like 4 129 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00367 Viun-Chr4 2359974 2363949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00367 4 214 Core DNA Replication Machinery Family AT5G26680 27.273 1.03e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00367 K10746 - gmx:100817932 694.886