Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00366 ATGGGCATCAAGGATCTCCTGAGGTTCATGAAACCTTACATCGAACCTATCCACATCAAGGAGTATGCCGGAAAACGCGTGGGTATTGATGCGTATTCGTGGCTGCATAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTTGATTCCGAGAGTGTAAGGAAGTTGCGATATATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAGGCAGCAACGGAGGAAGAAAGGAACAGAAAAAGAAGGGCTAATCGAGAATTGGCAATGACGAAGCTCAAAGAAGGGAATGTTGCTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATAAGCTAATCCAGACCCTGAAAGCAGAGAAAATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTATCTCACCTTGGGGTAAAAAATGGTGGGGTTGCAGCAGTGATCACTGAAGATAGTGATCTTATAGCATATGGCTGTCCAGATATTATTTTTAAGATGGACCGAAATGGGAATGGTGAAAGAATACAGTTAAAGAAGGTATTTTCGGCTGAGTTTGGTAGACCTTCGTTTCGGAGTTTCAACATGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCTGTTCTTAAGCTTGAGAAAGGTAACCAAATGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGCATGCTCGAATATATGATACCACTGCCAAAGAACTGAAACACGTGAAGCCTCTTCCACAAAATTTTCTTGAGTCACATGATGGGAATCTCGATTTCTTGGGGCCAGAAATTCCCCCATCTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGAAAGCCTTTGATAAGTCTGAAACTTCTAGATTTCCTCTGCACCCCACTGATCTCCAAAGCTTTGATCAAGTCCAGAAAGTTGAAGTTCCTACACCATCTAGGCCAAAGAATAGCTTCTCAATCATTGCTTCCCAATACACCAGAGAAAATAGTACAGTCACAAGGCTTTTAGATGAAGACAAGTATTCCAATGAAGCCTTGGCACTTGAAAAACTAATCATGCCTTTGGGAACAGTTGGAACAGAAGAAAAGACCATTGTATCTGATAACACTCCTTTGAAGGTTCCTGATAACAATCCATTTAGGATAAGAAAAAATGAGGAAAGATATCTGACAAAGGAGAATGTTGAAAAGATTTCTGTTGCAAGCAGCATGGAATATACTGACTTGTGCATGTCTCCAGATAACTTTCAAGAAGAGGGGTCTGACGGGAATCTCTTAAAGAAGAGGAAATTTCTGAACACTTTATCAGATAAAGTTGAAGCCACCTATGAACCGGTTTCAGTAGTGACTGAAGCAGAAAAATCTGATGTATGTTTGACAGTGGAATCCCCAGAAAGTGTAACTTCTGAGCCTAAGATAATTGCTGATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGGAGTAATAACAACAGAACACTTTTGCATTTCTTTTCTAGAGTGTAA 1731 0.4044 MGIKDLLRFMKPYIEPIHIKEYAGKRVGIDAYSWLHKGAYSCSMELCLDSESVRKLRYIEYFMHRVNLLRFYKITPVVVFDGGNVPCKAATEEERNRKRRANRELAMTKLKEGNVAAASELFQRAVNITPVMAHKLIQTLKAEKIEFVVAPYEADAQLAYLSHLGVKNGGVAAVITEDSDLIAYGCPDIIFKMDRNGNGERIQLKKVFSAEFGRPSFRSFNMELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGNQMPEDYAKTFQEAVAVFQHARIYDTTAKELKHVKPLPQNFLESHDGNLDFLGPEIPPSIVKSIAEGNLNPSTKKAFDKSETSRFPLHPTDLQSFDQVQKVEVPTPSRPKNSFSIIASQYTRENSTVTRLLDEDKYSNEALALEKLIMPLGTVGTEEKTIVSDNTPLKVPDNNPFRIRKNEERYLTKENVEKISVASSMEYTDLCMSPDNFQEEGSDGNLLKKRKFLNTLSDKVEATYEPVSVVTEAEKSDVCLTVESPESVTSEPKIIADLKGRSESKKKSNRRSNSKKTGSNNNRTLLHFFSRV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00366 576 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Viun4g00366 576 CDD H3TH_FEN1-like 223 295 - -
Viun4g00366 576 SMART xpgineu 141 214 IPR006086 GO:0004518
Viun4g00366 576 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Viun4g00366 576 FunFam exonuclease 1 218 291 - -
Viun4g00366 576 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Viun4g00366 576 SMART xpgn3 1 102 IPR006085 GO:0004518
Viun4g00366 576 Coils Coil 91 111 - -
Viun4g00366 576 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 549 IPR006084 -
Viun4g00366 576 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Viun4g00366 576 Gene3D - 1 211 - -
Viun4g00366 576 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Viun4g00366 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Viun4g00366 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Viun4g00366 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Viun4g00366 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Viun4g00366 576 Gene3D - 218 291 - -
Viun4g00366 576 FunFam Exonuclease 1, putative 1 212 - -
Viun4g00366 576 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Viun4g00366 576 MobiDBLite consensus disorder prediction 535 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00366 Viun-Chr4 2359974 2363953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00366 1 320 Core DNA Replication Machinery Family AT5G26680 26.254 3.78e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00366 K10746 - gmx:100817932 893.649