Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00334 ATGCCTGTTGTGACTGAACACATGAAGTGGAGAAGACCAAGAAACCAATTCGGATGCCCCATTTCAGAAACTGATCCAAATCCTCAAACCCCTTCTACAATCCAATCATCTCACACCAAATCCACCATCTCTGCTCTCTTATCTTCATTCTCCACCTCTAATGAAACCACACATGTCAGAGACCAAAACAGCAGCAAAAACAGCAAAAAATTCTCTACGGCAAGCTTCAGAGGACTCGGTTGCACTGTCAGAGCATCACAGAAGGTTTCTGTGCCCACGGTGATTCGGTCCTCGGCGGATTGGGAAGGAAAGAGGAACAGGAAGAAAAAACACAGGAGGAACAGTAACAGTAACAAGACATGTGATGGAGTTGTTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCTGGTATTGGGTTCTCAACAGATGCTGCTGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGGATGTTTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCATTGTAAAGCCAGAAAACTTCCCTTTTCTGGATGCTGCTGAATCTGATATCTTCACAGAACGTAGTGGATTAGACCCTTTTGGAACTGCTAGATTCTATCGCCACGTTCCACATCCTTCACCTGATGGTCTTGCTGAGATTATGATAATCCGAGGAAGAAGAATACTAATGGGGGGTCGATTCAATTCACACGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCGTACGAGCAATTGCTTGAGCTTGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGGAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAAGCAAATGATGAGTTGGGGAAATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACCTTAA 1086 0.4374 MPVVTEHMKWRRPRNQFGCPISETDPNPQTPSTIQSSHTKSTISALLSSFSTSNETTHVRDQNSSKNSKKFSTASFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKHRRNSNSNKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDAAAAAAASVDCVVARKDVSARGKLDVVERERSSYFGRRIVKPENFPFLDAAESDIFTERSGLDPFGTARFYRHVPHPSPDGLAEIMIIRGRRILMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKHQEDKKCSVCQEEYEANDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00334 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Viun4g00334 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 357 IPR045191 GO:0061630
Viun4g00334 361 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Viun4g00334 361 Pfam Ring finger domain 312 354 IPR001841 -
Viun4g00334 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 359 IPR013083 -
Viun4g00334 361 SUPERFAMILY RING/U-box 306 359 - -
Viun4g00334 361 SMART ring_2 313 353 IPR001841 -
Viun4g00334 361 MobiDBLite consensus disorder prediction 1 41 - -
Viun4g00334 361 MobiDBLite consensus disorder prediction 94 119 - -
Viun4g00334 361 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00334 Viun-Chr4 2053557 2059772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00334 4 268 C3H Transcription Factor Family AT1G73760 38.811 7.69e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00334 - - gmx:100818517 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00334 4 2053557 2059772 Viun3g00114 3 536845 540367 ECH
Viun4g00334 4 2053557 2059772 Viun4g00334 4 2053557 2059772 ECH