Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00324 ATGAGATTTAGGTGTGATCTCTTTCAGTGCTGCTTCGCTAGCACATCTTCTGACACATTTCCAAAGCGCAGTAATTTGAAGTGGCCAATCTTTCCCTACAAGGAAATTGAAAAAGCCACAAATAATTTTGATCAATCTCGTTATCTTGGAAATGGAGAAAGAAAGAAAGGCTTTATCACTGAGTACTATGGAACACTTGAGGATGGACGTGAGATTACAATCCAGCGCTTTGAAAAAGACAAGTGCTACATATTGCAAAAGTTTATCAATGAAACTGTTCTTCTAAGTTACTTACCTCACAAAAATATTGTGTCAATTTATGGATGTACTTCTCAGCATGTGGAACCTCTGATAGTGCATGAATACCTATCCAATGGAAATCTTGCTGCACATTTTCAAGGTGTAAAGGATGAAAACATTACACTACCTTGGCTTAAACGTTTGGATATAGCCATTGATATTGCAAATGCATTGGCATATCTCCACTATTACGGCATCATCCACCGCAATGTGAAATCCAGCAATATTCTCCTAGATTTAAACTTTTCTGCTAAACTTGGTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACGCCACCCATGTTACTAGTGACAGAGTAGGTTCAAGTGGTTACATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTGAAAATTGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGCTCCTATCATCAAAGCTTGCAATATACCATATTCTCAACGAGGAGAGTAATCTCGGTATCCCTTTTAGCAGAAAAATTGAAAACAAAACTTTGGTGGAGCTCTTTGATCCAAGACTTGGGTTCCAATCAAACCTTAACATCAAGCAGTTGATGACTGCTACAGCTGAGCTTGCAGTTCTCTGCATGAAATGTCCACAAGAATCGCGGCCAAACATGGAAGAGGTGCTAGAGATTCTCAATGAAATGAAGCAAGGGAGATATGGAACAAACTCTCACTCAACTAAAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCCACTAACAATTTTGGCACTTGCCTTGGTAAGGGAGGATATGGCAGCGTATACTATGGAAAACTTAAAGATGGACTAGAAGTTGCAATAAAATGTTTCCATGATGAGAATGAGACACAAGAGACCATTAAGCAATTCATGAAAGAATCTGACATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTTTATGGCCGCACTTCTCGCCATTGCAAGAAGCACATGCTAGTGTATGAGTACATCTCCAATGGCACTCTTTCCAAACATCTTTATAATCCTTTAAATGGAAAACTACCATGGGAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATTTCTTCATGATTCAAGTATCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTCGGGTTAAAGTTGCTGATTTTGGATTCTCTCGGTCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTGGGAACTCGTGCTTATATAGATCCTGACTACTATGTATCTGGAAGGGTGAGTAACAAGAGTGATGTGTATAGTTTTGGAGTGGTCTTGTTTGAACTCATATCATCAATCCACCCAAGTTTGGTTGCAGGCACAGATAATGAGACTCTTGCACAGTTTGCAAAGAGAAAAATCTTGAACAATGAATTAAACGAGATAGTTGATCCAAGCTTTTCTTGTGGTTCTGACAATAACATTTTGGAAACGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTGCTGGAGACCCTTGAGGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACATAG 1914 0.396 MRFRCDLFQCCFASTSSDTFPKRSNLKWPIFPYKEIEKATNNFDQSRYLGNGERKKGFITEYYGTLEDGREITIQRFEKDKCYILQKFINETVLLSYLPHKNIVSIYGCTSQHVEPLIVHEYLSNGNLAAHFQGVKDENITLPWLKRLDIAIDIANALAYLHYYGIIHRNVKSSNILLDLNFSAKLGNLHLSCKLPDGVPVDATHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLAIYHILNEESNLGIPFSRKIENKTLVELFDPRLGFQSNLNIKQLMTATAELAVLCMKCPQESRPNMEEVLEILNEMKQGRYGTNSHSTKALKIFHHAELEEATNNFGTCLGKGGYGSVYYGKLKDGLEVAIKCFHDENETQETIKQFMKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLYNPLNGKLPWETRLNIAIETATALVFLHDSSIIHRDVKGSNILLDENFRVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYVSGRVSNKSDVYSFGVVLFELISSIHPSLVAGTDNETLAQFAKRKILNNELNEIVDPSFSCGSDNNILETITAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00324 637 FunFam Wall-associated receptor kinase 3 431 637 - -
Viun4g00324 637 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00324 637 Gene3D Phosphorylase Kinase; domain 1 326 430 - -
Viun4g00324 637 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Viun4g00324 637 Gene3D Transferase(Phosphotransferase) domain 1 125 325 - -
Viun4g00324 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Viun4g00324 637 Pfam Protein tyrosine and serine/threonine kinase 354 623 IPR001245 GO:0004672|GO:0006468
Viun4g00324 637 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Viun4g00324 637 Pfam Protein kinase domain 74 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00324 637 SUPERFAMILY Protein kinase-like (PK-like) 331 627 IPR011009 -
Viun4g00324 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 337 630 IPR044652 GO:0004672
Viun4g00324 637 SUPERFAMILY Protein kinase-like (PK-like) 22 324 IPR011009 -
Viun4g00324 637 SMART serkin_6 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00324 637 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00324 637 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Viun4g00324 637 ProSiteProfiles Protein kinase domain profile. 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00324 Viun-Chr4 1959047 1962855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00324 339 626 Receptor kinase-like Gene Family AT1G25390 51.361 2.04e-87 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun4g00324 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00324 - - vra:106773095 1177.54