Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00322 ATGATCCTTCCAATCTCCATCCATTACATTAAGCCTCAACTATGTATTATTACCACAATCTTCTTCTTTGCTACCACTGTTCTATCTTCTAATCCAAAATTTAAGGCCTGCACACCAAAAAGTTGTGGAAATGGCCCATCCATTAGGTATCCCTTCTGGATTTCTTATGAACAGGAATCATTTTGTGGCTATCCCCACTTTGAGATCACTTGCATGGACAAAAATCCAATTCTCAGAACTCCTAGTTATGATTTTCTAGTCAAAGATATCTCTTATTCTAACTCCTCTTTTACTGTGGGCAACATGGCTGCCTATGAGGACAATTGTCCTGTTCCCTTATATAATTACAGCTTTCATCAAACTCCCTTTACCTACAGTTCAGAAAATTGGAATCTCTCTTTCTTCTACAACTGTACCACAGAACCCATAGATTACCCCACTTACAAAGTAGATTGTGCTAGAAATGCTTCACATTATTCTTTTGCGGTTTTTCATGAGGAGGCACTAGAGCACAAAAACTATTCCTTGAATAGGTGTCAGTTTATGGTTAATGCGCCATTTAGCATGAATGCTTCCGTTAATTTCACTGGCTTATTGAGAATGAATTACATTGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACCTGATTGCAAGTACTGTGAGAAAAGTGGTGGGCGTTGTGGATTTGATGGCAATCAGTTTCTCTGTTTCTGCAAGGATAAGTCCTACGTAAAAAGTTGTGGTAGTGACAAATTGAATTGGCATCGGAAAATCATTATAGGTGTTTGTTCTGGTGTGGTGGGACTTATATTGGGCATTTGCGTCTATATTTGTCTTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCAAAGCTTCACCCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTAGAAGAGGCCACAAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGCCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAACGAAATCAAAATCCTAACTCGCATAGATCATCCAAATCTCGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTCCTTGTATATGAGTACATTCCCAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCCGGAACACTCCCTTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGACATCATCCACAGAGATGTTAAAACCAACAACATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCACACCATGTCACACATGTTTCAACAGCTCCACAAGGAACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTACAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTTCCTGCTGTTGATATCACAAGGCATAGACATGAGATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGATCCAAACATTGGTTTTGAATCAGATTTCAAGGCAAGGAAAATGATCAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGGCCTTCCATGGAAGAAGTGGCGGAGACTCTGAAGGATATACAGAGTGATGGGAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACTTCTGATGTTGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTATGAGCAAGACAACAACACCGAATACTAGTGGATAA 1989 0.4128 MILPISIHYIKPQLCIITTIFFFATTVLSSNPKFKACTPKSCGNGPSIRYPFWISYEQESFCGYPHFEITCMDKNPILRTPSYDFLVKDISYSNSSFTVGNMAAYEDNCPVPLYNYSFHQTPFTYSSENWNLSFFYNCTTEPIDYPTYKVDCARNASHYSFAVFHEEALEHKNYSLNRCQFMVNAPFSMNASVNFTGLLRMNYIEILKMGFLLNWTAPDCKYCEKSGGRCGFDGNQFLCFCKDKSYVKSCGSDKLNWHRKIIIGVCSGVVGLILGICVYICLRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSQSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPHHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNIGFESDFKARKMISAVAELAFQCLQSSKEMRPSMEEVAETLKDIQSDGKSKSQPEVMDISSTSDVVVLLKDDPPPPSPDSNAMSKTTTPNTSG 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00322 662 FunFam Wall-associated receptor kinase-like 20 415 623 - -
Viun4g00322 662 ProSiteProfiles Protein kinase domain profile. 338 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00322 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Viun4g00322 662 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Viun4g00322 662 Gene3D Transferase(Phosphotransferase) domain 1 415 626 - -
Viun4g00322 662 Pfam Wall-associated receptor kinase galacturonan-binding 37 99 IPR025287 GO:0030247
Viun4g00322 662 Pfam Protein kinase domain 341 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00322 662 MobiDBLite consensus disorder prediction 609 662 - -
Viun4g00322 662 Pfam Wall-associated receptor kinase C-terminal 158 244 IPR032872 -
Viun4g00322 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 660 IPR044652 GO:0004672
Viun4g00322 662 SUPERFAMILY Protein kinase-like (PK-like) 312 614 IPR011009 -
Viun4g00322 662 Gene3D Phosphorylase Kinase; domain 1 308 414 - -
Viun4g00322 662 SMART serkin_6 338 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00322 Viun-Chr4 1935510 1938839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00322 219 662 Receptor kinase-like Gene Family AT1G25390 52.747 2.79e-149 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun4g00322 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00322 - - qsu:112024175 783.867