Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00321 ATGGACGATAAGCATAGTCACGTTCTTGCCTTCGCACTCACCGTCTCTTGCTTCTTCTCCATCGCTTTGCCACACTCCCATTCTCAACCATCGCCTTGTGCTGAGCAGTCATACCGGTGCAACATAAGCGTGTCCGCCATCTTCGATCCTCCCTGGAAACAGATTCCAGCCTCTCAATGTAACGGCGCCGACACATCATCCCTGCTCAGCTGCCATGCTCCTTATGATAATGTTCCTATTGAATCTCAAAATTTCACAGTGAAGGATATCAACAACACCGCTCACACCATGAAAGTCATGCTAACACCCCCTGTAACCGATGTCTGTTCTCCTCACTTTTTGAACTTCGATTACCAGACCTTCAACAACACTCTGCTCCAGTATAACGCGTCCGTGCATAAAATAATCATATTTGAAAATTGTCTTGGAATCCCAAATTTCCCTTCAAAACGCAACTTTACGTGCGTGGATGATGTGTATTATTTTGAGGAGGGATACACGAAAACGGAGATGCTCCACAGATACCCACAGCTTAAGGATTGCACGGGACATCGGGAGGTGGCTGCTGCCGCTCCTCTGGATGGTTATGATGATAGTGATGACGGAGCTAGAGTTCTGGAACAAGCTCTCAGTCATGCTTTTGAGGTCTACTATGGTGTTCCTGATGGTTGCTGCAGAGAAAGTGACGAAAGTTGTTGGAGAGATGATTATTATGGTGAACATGTAGTTTCATGCAACTACTATTGCCCAAATCAAAACTGTTCTCCCAAAGGAGACAAATTGAATTGGCATCGGAAAATCATTATAGGTGTTTGTTCTGGTGTGGTGGGACTTATATTGGGCATTTGCGTCTATATTTGTCTTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCAAAGCTTCACCCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTAGAAGAGGCCACAAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGCCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAACGAAATCAAAATCCTAACTCGCATAGATCATCCAAATCTCGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTCCTTGTATATGAGTACATTCCCAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCCGGAACACTCCCTTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGACATCATCCACAGAGATGTTAAAACCAACAACATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCACACCATGTCACACATGTTTCAACAGCTCCACAAGGAACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTACAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTTCCTGCTGTTGATATCACAAGGCATAGACATGAGATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGATCCAAACATTGGTTTTGAATCAGATTTCAAGGCAAGGAAAATGATCAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGGCCTTCCATGGAAGAAGTGGCGGAGACTCTGAAGGATATACAGAGTGATGGGAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACTTCTGATGTTGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTATGAGCAAGACAACAACACCGAATACTAGTGGATAA 2007 0.442 MDDKHSHVLAFALTVSCFFSIALPHSHSQPSPCAEQSYRCNISVSAIFDPPWKQIPASQCNGADTSSLLSCHAPYDNVPIESQNFTVKDINNTAHTMKVMLTPPVTDVCSPHFLNFDYQTFNNTLLQYNASVHKIIIFENCLGIPNFPSKRNFTCVDDVYYFEEGYTKTEMLHRYPQLKDCTGHREVAAAAPLDGYDDSDDGARVLEQALSHAFEVYYGVPDGCCRESDESCWRDDYYGEHVVSCNYYCPNQNCSPKGDKLNWHRKIIIGVCSGVVGLILGICVYICLRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSQSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPHHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNIGFESDFKARKMISAVAELAFQCLQSSKEMRPSMEEVAETLKDIQSDGKSKSQPEVMDISSTSDVVVLLKDDPPPPSPDSNAMSKTTTPNTSG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00321 668 SUPERFAMILY Protein kinase-like (PK-like) 318 620 IPR011009 -
Viun4g00321 668 Gene3D Transferase(Phosphotransferase) domain 1 421 642 - -
Viun4g00321 668 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Viun4g00321 668 Gene3D Phosphorylase Kinase; domain 1 314 420 - -
Viun4g00321 668 MobiDBLite consensus disorder prediction 615 668 - -
Viun4g00321 668 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 666 IPR044652 GO:0004672
Viun4g00321 668 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Viun4g00321 668 Pfam Protein kinase domain 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00321 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun4g00321 668 FunFam Wall-associated receptor kinase-like 20 421 629 - -
Viun4g00321 668 ProSiteProfiles Protein kinase domain profile. 344 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00321 668 SMART serkin_6 344 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00321 Viun-Chr4 1935510 1942501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00321 213 668 Receptor kinase-like Gene Family AT1G25390 52.026 3.03e-149 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun4g00321 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00321 - - gmx:100800873 682.174