Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00320 ATGTCACAGACATTCCAAGTCATTGACATGAATCAAACATCTAAGGTTTTGAAGATTGCAAGGTTGGATTTATTGGCTGACCCTTGTACTAATGATTATGTGAATGTGAAGTTGGATCCTGATTTCTTTAAGTACACTTCTAATGATGATGAGTACACTTTGTTATATAATTGCGGTTCTCTTGGTTCTCTTGGATATACGTCTAGTGTGAATATTGGAGGAGCAATAGCATTTAATTGCCCCGTAGATGGTGGTCTTCCTGCATTTTTTGTGCCGAGTACTGAAGTGGTTAATTTCAATAGTTTGGGTTTGGGGTGCAAGAATAGCATCAATATTTCTGTTCTAAGAGAGGCTGTGAAGGTTGATTCGGTTGTGGGAAATGTTTTAGCAAGTGGATTTGAGGTTGGATGGAGTGGTGTGAATGAAAATCAATGTGATGGTTGCACAAGATCTGGTGGGAGATGTGGATACAATGCATCTATGAGTGGATTTAAGTGTCTCTGTCCTAATCACCAATCTGATGCTGAGTTTTGTAAACAAATCCCAGCAAGGTCTCCAGAATCAACACCTAGAGTAACACCAGCAAAGTCACAGTTACCCCCTTATTCTCCAGAGTCTCCAGAGTCTCCACATGCTCCGAACAAATTGAATTGGCATCGGAAAATCATTATAGGTGTTTGTTCTGGTGTGGTGGGACTTATATTGGGCATTTGCGTCTATATTTGTCTTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCAAAGCTTCACCCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTAGAAGAGGCCACAAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGCCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAACGAAATCAAAATCCTAACTCGCATAGATCATCCAAATCTCGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTCCTTGTATATGAGTACATTCCCAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCCGGAACACTCCCTTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGACATCATCCACAGAGATGTTAAAACCAACAACATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCACACCATGTCACACATGTTTCAACAGCTCCACAAGGAACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTACAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTTCCTGCTGTTGATATCACAAGGCATAGACATGAGATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGATCCAAACATTGGTTTTGAATCAGATTTCAAGGCAAGGAAAATGATCAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGGCCTTCCATGGAAGAAGTGGCGGAGACTCTGAAGGATATACAGAGTGATGGGAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACTTCTGATGTTGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTATGAGCAAGACAACAACACCGAATACTAGTGGATAA 1872 0.4215 MSQTFQVIDMNQTSKVLKIARLDLLADPCTNDYVNVKLDPDFFKYTSNDDEYTLLYNCGSLGSLGYTSSVNIGGAIAFNCPVDGGLPAFFVPSTEVVNFNSLGLGCKNSINISVLREAVKVDSVVGNVLASGFEVGWSGVNENQCDGCTRSGGRCGYNASMSGFKCLCPNHQSDAEFCKQIPARSPESTPRVTPAKSQLPPYSPESPESPHAPNKLNWHRKIIIGVCSGVVGLILGICVYICLRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSQSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPHHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNIGFESDFKARKMISAVAELAFQCLQSSKEMRPSMEEVAETLKDIQSDGKSKSQPEVMDISSTSDVVVLLKDDPPPPSPDSNAMSKTTTPNTSG 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00320 623 FunFam Wall-associated receptor kinase-like 20 376 584 - -
Viun4g00320 623 SMART serkin_6 299 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00320 623 ProSiteProfiles Protein kinase domain profile. 299 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00320 623 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00320 623 MobiDBLite consensus disorder prediction 570 623 - -
Viun4g00320 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Viun4g00320 623 Gene3D Phosphorylase Kinase; domain 1 269 375 - -
Viun4g00320 623 Gene3D Transferase(Phosphotransferase) domain 1 376 597 - -
Viun4g00320 623 Pfam Wall-associated receptor kinase C-terminal 101 170 IPR032872 -
Viun4g00320 623 SUPERFAMILY Protein kinase-like (PK-like) 273 575 IPR011009 -
Viun4g00320 623 MobiDBLite consensus disorder prediction 184 212 - -
Viun4g00320 623 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Viun4g00320 623 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 621 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00320 Viun-Chr4 1935510 1946282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00320 217 623 Receptor kinase-like Gene Family AT1G25390 55.742 3.97e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun4g00320 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00320 - - gmx:100800873 915.22