Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00319 ATGCCAAAACCCTATTACTCCCTCTTTGCAGTGTTCATCCTTATAGTGTCATGTCATGCTCAAACTAATAGTAACACATCAACAGTGTGTGCTCCTTCTAACTGTGGTAACATCAACATTAGTTACCCTTTTTGGAAGAAGTCCAACACCAACGTTCGAGAGTTTTGTGGCTACCCTGAGTTTGGTATTGAGTGCTCGGAGGACCATGCCATCATTAGTTTTCCAAGTGACACATACCAAGTCGCAGATATAAACTATGATGAGTTTTCAATTACACTTCTTGACATAGATGTGTTGGACCAACCATGTCCTAGGGCACGACACAATGTTTCCCTACAAAACCTTCCTTTGTCTTTCAGTTCATTAGATTTGAATCTGAGTTTCTACTTCAACTGCAGTTCTTACCCTTCATCTGTTGAGCACATAGGGTGCATGCAGCAACATGATAGGAATAAGTCTTATGTGTTTCTGGCTGGTGATGAAGTTAAGAGTGGATACGGTTGGGTGAGGCAGTGTGAGGAGCATGTTGTGGTGACAGTGAAGCAAGAAGAGATTGATGTTACTAATTTGATCACTGGTTTTGGTGATGCCATGAAGAAAGGGTTTGTGCTTGATTGGGTGAGTGCTAAGGATTGTGCAGCGTGTGAGGAGTCTAAAGGCTATTGCAGATTTGATCATAACACCAAGCAATCAAGTTGCTTATGCAGAGATGGTAGAACTGTTGCCAAAAGTTGCAAAAAAGACAAATTGAATTGGCATCGGAAAATCATTATAGGTGTTTGTTCTGGTGTGGTGGGACTTATATTGGGCATTTGCGTCTATATTTGTCTTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCAAAGCTTCACCCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTAGAAGAGGCCACAAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGCCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAACGAAATCAAAATCCTAACTCGCATAGATCATCCAAATCTCGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTCCTTGTATATGAGTACATTCCCAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCCGGAACACTCCCTTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGACATCATCCACAGAGATGTTAAAACCAACAACATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCACACCATGTCACACATGTTTCAACAGCTCCACAAGGAACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTACAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTTCCTGCTGTTGATATCACAAGGCATAGACATGAGATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGATCCAAACATTGGTTTTGAATCAGATTTCAAGGCAAGGAAAATGATCAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGGCCTTCCATGGAAGAAGTGGCGGAGACTCTGAAGGATATACAGAGTGATGGGAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACTTCTGATGTTGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTATGAGCAAGACAACAACACCGAATACTAGTGGATAA 1974 0.4255 MPKPYYSLFAVFILIVSCHAQTNSNTSTVCAPSNCGNINISYPFWKKSNTNVREFCGYPEFGIECSEDHAIISFPSDTYQVADINYDEFSITLLDIDVLDQPCPRARHNVSLQNLPLSFSSLDLNLSFYFNCSSYPSSVEHIGCMQQHDRNKSYVFLAGDEVKSGYGWVRQCEEHVVVTVKQEEIDVTNLITGFGDAMKKGFVLDWVSAKDCAACEESKGYCRFDHNTKQSSCLCRDGRTVAKSCKKDKLNWHRKIIIGVCSGVVGLILGICVYICLRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSQSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPHHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNIGFESDFKARKMISAVAELAFQCLQSSKEMRPSMEEVAETLKDIQSDGKSKSQPEVMDISSTSDVVVLLKDDPPPPSPDSNAMSKTTTPNTSG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00319 657 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
Viun4g00319 657 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Viun4g00319 657 FunFam Wall-associated receptor kinase-like 20 410 618 - -
Viun4g00319 657 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Viun4g00319 657 Gene3D Transferase(Phosphotransferase) domain 1 410 621 - -
Viun4g00319 657 Pfam Protein kinase domain 336 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00319 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Viun4g00319 657 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Viun4g00319 657 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 655 IPR044652 GO:0004672
Viun4g00319 657 SMART serkin_6 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00319 657 MobiDBLite consensus disorder prediction 604 657 - -
Viun4g00319 657 SUPERFAMILY Protein kinase-like (PK-like) 307 609 IPR011009 -
Viun4g00319 657 Pfam Wall-associated receptor kinase C-terminal 144 238 IPR032872 -
Viun4g00319 657 ProSiteProfiles Protein kinase domain profile. 333 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00319 Viun-Chr4 1935510 1949967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00319 20 657 Receptor kinase-like Gene Family AT1G25390 43.625 4.80e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun4g00319 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00319 - - gmx:100800873 734.176