Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00317 ATGTTTGCAAATGCATTGAAACTAAACATGTTCCGCAGACTCACTCTCTTCTTTCTGTTCTCTGCAACACTTCTTCTTCCAACTGCATGTCATGTGAACTGCAACGCTTCGTCTATGCTTCTGGGTCAAAACCATTCAAAAATCGTAAACAAAGTTGGTGATGTCTTCACGGGGTGTGATGATAGAAAAAATTACAGCAGCAGCAGGTTCATGGGTAATAATTCTGCCTACGTGGCACGCATACTTAATGACGTGTCACAACATGTTAGTATTAATAGCACTACTACTACTACCACCGTGGTTTGCAACAATACAAGTTGTGTTACCAACGAAACAACACACACATCATCGTCACCGTCGCCAGTGCGGTTTTCATCACCGCCGCCGCCGCAGTTTTCATCACCACCGCCGCCACTGCGGTTTTCATCACCACCACCGCCACTGCGGTTTTCATCACCACCACCGCCACGTTCACGGCGATCACCACCAATTTCATTATCACCGGCACCAGCATTAGCACCAACGTTTTCTGGTGGTTCAGATTATACATATAACACAAATAACCACCGGGGCACAAGGATAATTATAATTATTATTATCATAGGTGTTGTAAGTGCGGTAATTGGAGTATTTTTCTTCATACTATGTTGTCTTAGACGTAAGTCTTTAACTCGACCAATCAAATTTTGTTTTACCACAAACAATGATTCAAATGTTCAAGAATTTTTAAGAAATCATGGAGCTATAGCACAAAAAAGATACAAATTTTCAGAAGTGCAGAAAATGACTAATTCATTCAAAGTTAAAATTGGTCAAGGTGGTTTTGGTACAGTATACGAAGGTAAGCTGCTCACAGGTATCCCGGTGGCTGTAAAATTATTGAATGCATCCAAAAGAAATGATGAAGAGTTTATCAATGAGGTTGTCAGCATCAGTAAAACATCTCATGTTAATATTGTCACACTTCTTGGATTTTGTTTGGAAGGCTCCAAAAAGGCTCTCATATATGAGTTTATGGCTAATGGTTCCTTGGATAAGTTTATCTACAAAAGAGAGCAAGAACCAGAAACAATTACATCTTTGACCTGGGAGGATTTATATCAAATTGCAATAGGAATAGCTCGAGGGTTGGAGTACTTGCACAGGGGCTGCAGTACTAAAATTCTACATTTTGACATAAAGCCGCATAATATTCTTTTGGATGAGAATTTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGTTGTGTCCCAGGAATGAAAGCATTATTTCTATTTCTGGTACAAGAGGAACAATGGGATATTTAGCTCCTGAAATGACCAATAGACATTTTGGTGGAATTTCACAAAAGTCTGATGTGTATAGTTATGGAATGATGCTACTAGAGATGGTAGGAGGAAGGAGGAACATTAATCCTAAAGCTGATCATACAAGTGAGATATACTTCCCACATTTTGCATACAGAAGACTTGATGTGGATAATGATGTGAGACCATATGAAGTGATGAATGCAGAAGAAGATGAGATTGCAAAGAGAATGAGTGTAGTGGGCTTATGGTGCATTCAATCACTTCCAAATGATAGACCTACAATGAGCAGAGTTGTAGACATGTTGGAAGGTAACGTAAATTCCTTGGAAATGCCTCCAAAACCTTTGTTTTCCTCTCCTACTAGATCAGAAACATAA 1689 0.3914 MFANALKLNMFRRLTLFFLFSATLLLPTACHVNCNASSMLLGQNHSKIVNKVGDVFTGCDDRKNYSSSRFMGNNSAYVARILNDVSQHVSINSTTTTTTVVCNNTSCVTNETTHTSSSPSPVRFSSPPPPQFSSPPPPLRFSSPPPPLRFSSPPPPRSRRSPPISLSPAPALAPTFSGGSDYTYNTNNHRGTRIIIIIIIIGVVSAVIGVFFFILCCLRRKSLTRPIKFCFTTNNDSNVQEFLRNHGAIAQKRYKFSEVQKMTNSFKVKIGQGGFGTVYEGKLLTGIPVAVKLLNASKRNDEEFINEVVSISKTSHVNIVTLLGFCLEGSKKALIYEFMANGSLDKFIYKREQEPETITSLTWEDLYQIAIGIARGLEYLHRGCSTKILHFDIKPHNILLDENFCPKISDFGLAKLCPRNESIISISGTRGTMGYLAPEMTNRHFGGISQKSDVYSYGMMLLEMVGGRRNINPKADHTSEIYFPHFAYRRLDVDNDVRPYEVMNAEEDEIAKRMSVVGLWCIQSLPNDRPTMSRVVDMLEGNVNSLEMPPKPLFSSPTRSET 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00317 562 Pfam Protein tyrosine and serine/threonine kinase 267 539 IPR001245 GO:0004672|GO:0006468
Viun4g00317 562 FunFam PR5-like receptor kinase 339 551 - -
Viun4g00317 562 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Viun4g00317 562 PIRSF TyrPK_CSF1-R 17 120 - -
Viun4g00317 562 PIRSF TyrPK_CSF1-R 265 357 - -
Viun4g00317 562 PIRSF TyrPK_CSF1-R 510 549 - -
Viun4g00317 562 PIRSF TyrPK_CSF1-R 349 469 - -
Viun4g00317 562 Gene3D Transferase(Phosphotransferase) domain 1 339 548 - -
Viun4g00317 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Viun4g00317 562 ProSiteProfiles Protein kinase domain profile. 264 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00317 562 Gene3D Phosphorylase Kinase; domain 1 228 338 - -
Viun4g00317 562 PANTHER RUST RESISTANCE KINASE LR10-RELATED 235 556 IPR045874 GO:0004672
Viun4g00317 562 MobiDBLite consensus disorder prediction 110 171 - -
Viun4g00317 562 SUPERFAMILY Protein kinase-like (PK-like) 249 540 IPR011009 -
Viun4g00317 562 SMART serkin_6 264 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00317 562 MobiDBLite consensus disorder prediction 122 169 - -
Viun4g00317 562 FunFam serine/threonine-protein kinase PBS1-like 232 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00317 Viun-Chr4 1923320 1930035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00317 201 554 Receptor kinase-like Gene Family AT1G66910 52.617 3.35e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00317 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00317 - - var:108343960 747.273