Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00315 ATGGATGGTAAGCATAATCTCGTTCTTGCGTTCGCGGTCACCGTGTCTTGGTTGTTGTCCATCGGTTTGCCACCGTCCCACTCTCAAACACCGCCACCACAGCTTTGTGGTGAGCAGTCATATCTGTGCAGAAAAAACATTTCCGCCATCTTCGATCCTCCCTGGGAACAGATTCCAGCCTCTCAATGTAACGGCGCCGACCCATCATCCCTGCTCAGCTGCCATGCTCCTTATGATAGTATTAAGGTTCCAACTGAATCTCAAAATTTCACAGTGAAGGATATCGACAGCGCCACTCGCACCATGAAACTCATGCTAAGACCCCCTGTCAATCATGTCTGTTCTCCAAACTTTTTTCACAGCTACCAGTACTTCAACAACACTCTGCTCCTGTATAACGCGCCTGTGCATCAAATCACCATATTTGAACATTGTTCTACAATCATATTCGTAGATTTCCCTTCAATGCGCAACTTTACGTGCGGGGATGTTCTCTATTATTTTGTGGAGGGATACCCATACGGAGACCTTGAATCAGGTTGCAAGGGACGTTTGCAGGTGCCTGCTGTCGCTCCTCTGGATCGTTATTATGATACTGATGACGGAGCTTCAGTTCTGGAACAAGCTCTCAATGAAACGTTTATGGTCTACTACGGTATTCCTGATGGTTGCAGAAGATGCGGTCAGAGTGACGGAAGTTGCTGGCCATATGTTGATGATGAACATGTAGTTTCGTGCAAATACTATTGCCCAAATCAACACTGTTCTTCTCCCAAAACTAGTGGTACTTCTTCGGGAAATTGGGACCAAAGGAGGAAACTCATTATTTTAGGTGTTATAGGTTCAACAATTGCAATAGTGTTGATATCAATTTCAATTATGTATGTAAGATACAAGTCACCAAACTGGCGAGCAAATTTTGGCTTGGCTTCAAAAAGTAATCAAAATATTGAAGCATTTCTTAAAATTCACGGCCAATTAGCTCTTAAAAGATATAAATTATCATATGTCAAGAAAATAACCAACAACTTCAAAGAGAAGTTGGGACAAGGAGGCTTTGGTGCGGTGTACAAAGGAAAGTTATTCTGTGGTAGTCTTGTGGCTGTAAAGATGTTGAGTATGTTCAAGAAAGATGGTGAAGAATTTATGAATGAGGTTGCTAGCATCAGTAGAACTTCTCATATTAACGTCGTCTCTCTTCTTGGATTCTGTTTGGAAGGTCACAAGAGAGCTCTCATCTATGAATTCATGTCCAATGGTTCTCTTGACAAATTCATTTACAAAACAAGAGATGAAACACTTTCGTCCTTGAGTTGGGATATTATATATAAAATTGCAAAGGACATAGCTCGAGGGTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTCTGGACGAGAACTTTTGTGCAAAGATAGCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTATTGTTTCCTTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAAATGTGGAGTAGAAATTTTGGAAGAGTTTCGCATAAGTCTGATGTTTATAGTTACGGAATGATGCTGCTGGAGATGGTGGGAGGGAGGAAGAACATCAATGGTGAAGCAAGTCACACAAGTGAGGTATACTTCCCACATTGGGCATACAATAAGCTTGAGTTGGAGAGTGATTTGAGACCAGATATGGAGATGACAACAGAAGAAAATGAGATTGCAAAGAGGTTGGCGATGGTGGGTTTATGGTGCACTCAAACGTTTCCTAATGAGAGACCAACAATGAGCAGAGTGATTGATATGTTGGAAGGTAGCATGGATTCCCTACAAATCCCACCCAAACCTTTGTTGTCTTCTCCCACAAGATCACTGTCAGAACATTCCATCTCCTGA 1932 0.4182 MDGKHNLVLAFAVTVSWLLSIGLPPSHSQTPPPQLCGEQSYLCRKNISAIFDPPWEQIPASQCNGADPSSLLSCHAPYDSIKVPTESQNFTVKDIDSATRTMKLMLRPPVNHVCSPNFFHSYQYFNNTLLLYNAPVHQITIFEHCSTIIFVDFPSMRNFTCGDVLYYFVEGYPYGDLESGCKGRLQVPAVAPLDRYYDTDDGASVLEQALNETFMVYYGIPDGCRRCGQSDGSCWPYVDDEHVVSCKYYCPNQHCSSPKTSGTSSGNWDQRRKLIILGVIGSTIAIVLISISIMYVRYKSPNWRANFGLASKSNQNIEAFLKIHGQLALKRYKLSYVKKITNNFKEKLGQGGFGAVYKGKLFCGSLVAVKMLSMFKKDGEEFMNEVASISRTSHINVVSLLGFCLEGHKRALIYEFMSNGSLDKFIYKTRDETLSSLSWDIIYKIAKDIARGLEYLHKGCNTRIFHFDIKPHNILLDENFCAKIADFGLAKLCPRNESIVSLSDARGTMGYVAPEMWSRNFGRVSHKSDVYSYGMMLLEMVGGRKNINGEASHTSEVYFPHWAYNKLELESDLRPDMEMTTEENEIAKRLAMVGLWCTQTFPNERPTMSRVIDMLEGSMDSLQIPPKPLLSSPTRSLSEHSIS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00315 643 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Viun4g00315 643 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Viun4g00315 643 ProSiteProfiles Protein kinase domain profile. 342 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00315 643 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Viun4g00315 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 313 633 IPR045874 GO:0004672
Viun4g00315 643 FunFam PR5-like receptor kinase 417 627 - -
Viun4g00315 643 SUPERFAMILY Protein kinase-like (PK-like) 326 616 IPR011009 -
Viun4g00315 643 MobiDBLite consensus disorder prediction 625 643 - -
Viun4g00315 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun4g00315 643 Pfam Protein tyrosine and serine/threonine kinase 344 615 IPR001245 GO:0004672|GO:0006468
Viun4g00315 643 FunFam serine/threonine-protein kinase PBS1-like 310 416 - -
Viun4g00315 643 SMART serkin_6 342 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00315 643 CDD STKc_IRAK 348 617 - -
Viun4g00315 643 MobiDBLite consensus disorder prediction 623 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00315 Viun-Chr4 1915835 1919335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00315 9 641 Receptor kinase-like Gene Family AT1G66910 36.898 1.56e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00315 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00315 - - vra:106756549 889.026