Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00314 ATGGTTAATGCGCCATTTAGCATGAATGCTTCTGTTAATTTCACTGGCTCATTGAGAATGAATTACATTGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACCTGATTGCGAGTACTGTGAGAAAAGTGGTGGACGTTGTGGATTTGATGGCAATCAGTTTCTCTGTTTCTGCAAGGATAAGTCCTACTTAAAAAGTTGTGGTAGTGGGAATCGGGACCAAAAGAGGATAATAATTATTTTAGGTCTTGCAAGTGCAGCAATGGGAATGTTTATGATATGCCTCATAATAAACTGTAGAAAATGTATGTCATCAATAAGAAAGGTAAAATTTCGGATGACTAATGAGAAAGATATTGAAGTATTTTTGAAAGATCATGGAACTCTTGGACAAAAGAAATACAAATTTTCAGAAGTCAAGAAAATGACCAACAACTTCACACTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTGTACAAAGGAGAGTTATGCAATGGTTACCGTGTGGCTGTAAAGATATTAAGGGCATCCAAAGGAAATGGAAAAGACTTTATGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATATTGTCCAACTTATTGGATTCTGTTTGGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTCCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCCAGAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACACAACATTCTTTTAGACGAGAACTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGTAAAGAGAGCACTATTTCCGTTTCAGATGCCAGAGGAACAATAGGATATGTAGCTCCAGAAATATGCAACAAGCATTTCGGTGGAGTTTCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTGCTAGAAATAGTGGGAGTGAGGAACAATGTTAATGGAGAAGCCACTCAAACAAGTGAATACTTCCCGGATTGGATATACCGGAAGCTTGAGCAAGAGAATGAATTGAGAAGTGATGGTGTGATAGGCACAGAAGAAAAAGAGATAGAAAGGAGAATGATTGCGGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCAACTATGAGTAAAGTAATAGATATGTTAGAAGGCAACATAAATTCTGAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAACTACATTGGTGGCAGAATGGACCACTAGTTCTTTGCAGTCTGGCATAAGCGTGTGCGCCATTTCTGTGAACAGATTCTACCGTCAATGTAACTGTGGCAACCCATCATACCTGCTCAGATGCTAG 1437 0.3876 MVNAPFSMNASVNFTGSLRMNYIEILKMGFLLNWTAPDCEYCEKSGGRCGFDGNQFLCFCKDKSYLKSCGSGNRDQKRIIIILGLASAAMGMFMICLIINCRKCMSSIRKVKFRMTNEKDIEVFLKDHGTLGQKKYKFSEVKKMTNNFTLKLGEGGFGVVYKGELCNGYRVAVKILRASKGNGKDFMNEVASISRTSHVNIVQLIGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTPSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEICNKHFGGVSQKSDVYSYGMMLLEIVGVRNNVNGEATQTSEYFPDWIYRKLEQENELRSDGVIGTEEKEIERRMIAVSLWCIQTFPKDRPTMSKVIDMLEGNINSEEIPPKPVLSSPTTTLVAEWTTSSLQSGISVCAISVNRFYRQCNCGNPSYLLRC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00314 478 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Viun4g00314 478 ProSiteProfiles Protein kinase domain profile. 146 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00314 478 SMART serkin_6 146 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00314 478 FunFam PR5-like receptor kinase 221 430 - -
Viun4g00314 478 SUPERFAMILY Protein kinase-like (PK-like) 132 419 IPR011009 -
Viun4g00314 478 Pfam Protein tyrosine and serine/threonine kinase 149 418 IPR001245 GO:0004672|GO:0006468
Viun4g00314 478 PANTHER RUST RESISTANCE KINASE LR10-RELATED 117 435 IPR045874 GO:0004672
Viun4g00314 478 Pfam Wall-associated receptor kinase C-terminal 2 63 IPR032872 -
Viun4g00314 478 Gene3D Transferase(Phosphotransferase) domain 1 221 429 - -
Viun4g00314 478 FunFam serine/threonine-protein kinase PBS1-like 115 220 - -
Viun4g00314 478 Gene3D Phosphorylase Kinase; domain 1 105 220 - -
Viun4g00314 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00314 Viun-Chr4 1905626 1911635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00314 26 460 Receptor kinase-like Gene Family AT1G66910 46.239 4.46e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00314 PK_Tyr_Ser-Thr 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00314 - - vun:114181925 956.822