Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00313 ATGGTTAATGCGCCATTTAGCATGAATGCTTCTGTTAATTTCACTGGCTCATTGAGAATGAATTACATTGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACCTGATTGCGAGTACTGTGAGAAAAGTGGTGGACGTTGTGGATTTGATGGCAATCAGTTTCTCTGTTTCTGCAAGGATAAGTCCTACTTAAAAAGTTGTGGTAGTGGTAATAATATATTTCGAAATACTCTGATCATTTTTTTGGCTGTTCATTCAGATCTCTGTGGCGCTTCTGCTCCTTTCATGTTTTATTTCCCCATTCCCTCTTTTGGGTGCAGACGCAATTTCAATTCTACAATGCCATTCCAAATAAGGAATCGGGACCAAAAGAGGATAATAATTATTTTAGGTCTTGCAAGTGCAGCAATGGGAATGTTTATGATATGCCTCATAATAAACTGTAGAAAATGTATGTCATCAATAAGAAAGGTAAAATTTCGGATGACTAATGAGAAAGATATTGAAGTATTTTTGAAAGATCATGGAACTCTTGGACAAAAGAAATACAAATTTTCAGAAGTCAAGAAAATGACCAACAACTTCACACTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTGTACAAAGGAGAGTTATGCAATGGTTACCGTGTGGCTGTAAAGATATTAAGGGCATCCAAAGGAAATGGAAAAGACTTTATGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATATTGTCCAACTTATTGGATTCTGTTTGGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTCCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCCAGAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACACAACATTCTTTTAGACGAGAACTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGTAAAGAGAGCACTATTTCCGTTTCAGATGCCAGAGGAACAATAGGATATGTAGCTCCAGAAATATGCAACAAGCATTTCGGTGGAGTTTCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTGCTAGAAATAGTGGGAGTGAGGAACAATGTTAATGGAGAAGCCACTCAAACAAGTGAATACTTCCCGGATTGGATATACCGGAAGCTTGAGCAAGAGAATGAATTGAGAAGTGATGGTGTGATAGGCACAGAAGAAAAAGAGATAGAAAGGAGAATGATTGCGGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCAACTATGAGTAAAGTAATAGATATGTTAGAAGGCAACATAAATTCTGAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAACTACATTGGTGGCAGAATGGACCACTAGTTCTTTGCAGTCTGGCATAAGCGTGTGCGCCATTTCTGTGAACAGATTCTACCGTCAATGTAACTGTGGCAACCCATCATACCTGCTCAGATGCTAG 1584 0.3857 MVNAPFSMNASVNFTGSLRMNYIEILKMGFLLNWTAPDCEYCEKSGGRCGFDGNQFLCFCKDKSYLKSCGSGNNIFRNTLIIFLAVHSDLCGASAPFMFYFPIPSFGCRRNFNSTMPFQIRNRDQKRIIIILGLASAAMGMFMICLIINCRKCMSSIRKVKFRMTNEKDIEVFLKDHGTLGQKKYKFSEVKKMTNNFTLKLGEGGFGVVYKGELCNGYRVAVKILRASKGNGKDFMNEVASISRTSHVNIVQLIGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTPSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEICNKHFGGVSQKSDVYSYGMMLLEIVGVRNNVNGEATQTSEYFPDWIYRKLEQENELRSDGVIGTEEKEIERRMIAVSLWCIQTFPKDRPTMSKVIDMLEGNINSEEIPPKPVLSSPTTTLVAEWTTSSLQSGISVCAISVNRFYRQCNCGNPSYLLRC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00313 527 FunFam PR5-like receptor kinase 270 479 - -
Viun4g00313 527 Pfam Wall-associated receptor kinase C-terminal 2 63 IPR032872 -
Viun4g00313 527 SMART serkin_6 195 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00313 527 CDD STKc_IRAK 201 469 - -
Viun4g00313 527 Gene3D Phosphorylase Kinase; domain 1 154 269 - -
Viun4g00313 527 PANTHER RUST RESISTANCE KINASE LR10-RELATED 166 484 IPR045874 GO:0004672
Viun4g00313 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Viun4g00313 527 FunFam serine/threonine-protein kinase PBS1-like 164 269 - -
Viun4g00313 527 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Viun4g00313 527 Pfam Protein tyrosine and serine/threonine kinase 198 467 IPR001245 GO:0004672|GO:0006468
Viun4g00313 527 ProSiteProfiles Protein kinase domain profile. 195 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00313 527 Gene3D Transferase(Phosphotransferase) domain 1 270 478 - -
Viun4g00313 527 SUPERFAMILY Protein kinase-like (PK-like) 181 468 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00313 Viun-Chr4 1905624 1911635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00313 133 509 Receptor kinase-like Gene Family AT1G66910 49.614 2.48e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00313 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00313 - - vun:114181925 1082.4