Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00312 ATGGGAATGTTTATGATATGCCTCATAATAAACTGTAGAAAATGTATGTCATCAATAAGAAAGGTAAAATTTCGGATGACTAATGAGAAAGATATTGAAGTATTTTTGAAAGATCATGGAACTCTTGGACAAAAGAAATACAAATTTTCAGAAGTCAAGAAAATGACCAACAACTTCACACTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTGTACAAAGGAGAGTTATGCAATGGTTACCGTGTGGCTGTAAAGATATTAAGGGCATCCAAAGGAAATGGAAAAGACTTTATGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATATTGTCCAACTTATTGGATTCTGTTTGGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTCCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCCAGAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACACAACATTCTTTTAGACGAGAACTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGTAAAGAGAGCACTATTTCCGTTTCAGATGCCAGAGGAACAATAGGATATGTAGCTCCAGAAATATGCAACAAGCATTTCGGTGGAGTTTCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTGCTAGAAATAGTGGGAGTGAGGAACAATGTTAATGGAGAAGCCACTCAAACAAGTGAATACTTCCCGGATTGGATATACCGGAAGCTTGAGCAAGAGAATGAATTGAGAAGTGATGGTGTGATAGGCACAGAAGAAAAAGAGATAGAAAGGAGAATGATTGCGGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCAACTATGAGTAAAGTAATAGATATGTTAGAAGGCAACATAAATTCTGAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAACTACATTGGTGGCAGAATGGACCACTAGTTCTTTGCAGTCTGGCATAAGCGTGTGCGCCATTTCTGTGAACAGATTCTACCGTCAATGTAACTGTGGCAACCCATCATACCTGCTCAGATGCTAG 1170 0.3863 MGMFMICLIINCRKCMSSIRKVKFRMTNEKDIEVFLKDHGTLGQKKYKFSEVKKMTNNFTLKLGEGGFGVVYKGELCNGYRVAVKILRASKGNGKDFMNEVASISRTSHVNIVQLIGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTPSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEICNKHFGGVSQKSDVYSYGMMLLEIVGVRNNVNGEATQTSEYFPDWIYRKLEQENELRSDGVIGTEEKEIERRMIAVSLWCIQTFPKDRPTMSKVIDMLEGNINSEEIPPKPVLSSPTTTLVAEWTTSSLQSGISVCAISVNRFYRQCNCGNPSYLLRC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00312 389 FunFam PR5-like receptor kinase 132 341 - -
Viun4g00312 389 FunFam serine/threonine-protein kinase PBS1-like 26 131 - -
Viun4g00312 389 Gene3D Phosphorylase Kinase; domain 1 16 131 - -
Viun4g00312 389 ProSiteProfiles Protein kinase domain profile. 57 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00312 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Viun4g00312 389 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00312 389 Pfam Protein tyrosine and serine/threonine kinase 60 329 IPR001245 GO:0004672|GO:0006468
Viun4g00312 389 Gene3D Transferase(Phosphotransferase) domain 1 132 340 - -
Viun4g00312 389 SUPERFAMILY Protein kinase-like (PK-like) 43 330 IPR011009 -
Viun4g00312 389 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Viun4g00312 389 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 346 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00312 Viun-Chr4 1905467 1911635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00312 1 371 Receptor kinase-like Gene Family AT1G66910 49.604 1.51e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00312 PK_Tyr_Ser-Thr 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00312 - - vun:114181925 794.653