Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00311 ATGCCTCCTTCTACCATCATCATCATCACCACCCTTTTCTTCTTATCACTCTTCTTCCCAACATATGCATCTAGTGATGCTGCAAGGTCTCCAGCACCAACACCTACACTAATACCCTTTTTCCCTCACTATTATTTAAAACTGTCTCCACCAGACTCTCCACATGCTCCCAGTAAATCAAGTTATTTGAGGAAACTCATCATAGCTCTTACCGGAGTAACAATGGGAGTATTCGTGGTATGCCTCATAATAGGCTGTAGAAAATATATGTCATCAACAGGAAAGTTAAAATTTCAAATGACTAATGAGCAAGATATTGAAGTATTTTTAGAAGATCATGGAACTCTAGCACAAAAGAAATACAGATTTTCAGAAGTCAAGAAGATGACCAACAACTTCACAGTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTATGCAATGGTTACCATGTGGCTGTAAAAATATTAAGGGCATCGAAAGGAAATGGCAAAGACTTTATGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATATTGTCCAACTTATTGGATTCTGTTTGGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTTGACAAGTTTATCAGTTCTAAGGGACTAGAAAGCACTCCATCCTTGAGTTGGGATAATCTGTTGAAAATTGCAAAAGGGATAGCCAGAGGACTAGAATACTTGCACAAGGGATGCAACACTAGAATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCATTATTTCCGTTTCAGATGCTAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAGCATTTTGGTGGAGTTTCACAAAAATCTGATGTGTATAGTTATGGAATGATGCTTCTAGAAATAGTGGGAGTGAGGAAGAATGTTAATGGAGAAGCCACTCAAACAAGTGAATACTTCCCAGATTGGATATACCGGAAGCTTGAGCAAGAGCAAGAATTGAGAAGTGATGGTGTGATAGGCACAGAAGAAAAAGAGATAGAAAGGAGAATGATTGCAGTTAGTTTGTGGTGCATTCAAACGTTTCCGAAGGATAGACCTACTATGAGTACAGTAATAGATATGTTAGAAGGCAATGCGGATTCTCAAGAAATTCCCCCAAAACCTGTTCTTTCTTCTCCCATACCTGCATTGGTGGCAGAATGGACCACTAGTTCCTTGCAGTCCGAGTAG 1314 0.3919 MPPSTIIIITTLFFLSLFFPTYASSDAARSPAPTPTLIPFFPHYYLKLSPPDSPHAPSKSSYLRKLIIALTGVTMGVFVVCLIIGCRKYMSSTGKLKFQMTNEQDIEVFLEDHGTLAQKKYRFSEVKKMTNNFTVKLGEGGFGVVYKGELCNGYHVAVKILRASKGNGKDFMNEVASISRTSHVNIVQLIGFCLEGKKKALIYEFMPNGSLDKFISSKGLESTPSLSWDNLLKIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESIISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRKNVNGEATQTSEYFPDWIYRKLEQEQELRSDGVIGTEEKEIERRMIAVSLWCIQTFPKDRPTMSTVIDMLEGNADSQEIPPKPVLSSPIPALVAEWTTSSLQSE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00311 437 FunFam serine/threonine-protein kinase PBS1-like 99 205 - -
Viun4g00311 437 CDD STKc_IRAK 137 405 - -
Viun4g00311 437 ProSiteProfiles Protein kinase domain profile. 131 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00311 437 Gene3D Phosphorylase Kinase; domain 1 91 205 - -
Viun4g00311 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Viun4g00311 437 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524
Viun4g00311 437 SUPERFAMILY Protein kinase-like (PK-like) 117 404 IPR011009 -
Viun4g00311 437 FunFam PR5-like receptor kinase 206 415 - -
Viun4g00311 437 Pfam Protein tyrosine and serine/threonine kinase 134 403 IPR001245 GO:0004672|GO:0006468
Viun4g00311 437 Gene3D Transferase(Phosphotransferase) domain 1 206 414 - -
Viun4g00311 437 PANTHER RUST RESISTANCE KINASE LR10-RELATED 102 420 IPR045874 GO:0004672
Viun4g00311 437 SMART serkin_6 131 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00311 Viun-Chr4 1895154 1897718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00311 40 433 Receptor kinase-like Gene Family AT1G66910 49.132 1.14e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00311 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00311 - - vun:114181925 686.411