Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00310 ATGGACGATAAGCATAGTCACCTTCTTGCCTTCGCACTCACCGTCTCTTGCTTCTTCTCCATCGCTTTGCCACACTCCCATTCTCAACCATCGCCTTGTGCTGAGCAGTCATACCGGTGCAACATAAGCGTGTCCGCCATCTTCGATCCTCCCTGGGAACAGATTCCAGCCTCTCAATGTAACGGCGCCGACACATCATCCCTGCTCAGCTGCCATGTTTTTTATGATAATGTTCCAATTGAATCTCAAAATTTCACAGTGAAGGATATCAACAACACCGCTCACACCATGAAAGTCATGCTAACACCCCCTGTAACCGATGTCTGTTCTCCTCACTTTTTGAACTTCGATTACCAGACCTTCAACAACGCTCTGCTCCAGTATAACGCGTCAGTGCATGACATCACCATATTTGTTAATTGTCATGGAATCTCAAATTTCCCTTCAAAGCGCAACTTTACGTGCGATGATTTTCTGTATTATTTTGAGGAGGGGACGGAAGAGGAGATGCTCAACAGGTACCCACAGCTTGAGGTTTGCAAGGGACGTTTGTTCGTGGCTGCTGCCGCTCCTCTGGATCGTTATGATGATAGTGATGACGGAGCTAGAGTTCTGGAACAAGCTCTCAATCATGCGTTTCAGGTCAACTATGGTATTATTCCTGATGGTTGCACAAGATGCAGCCAAAGTGAGGGAACTTGCTGGGCATATGATCATGATGAACATGTAGTTTCATGCAAGTATTGCCCAAATGAATACTGTTCTCCCAAAAGAAGAAATTGGGATCAAAAGAGGAAACTCATTATTTTAGGTGTTACAGGTTCAGCATTTGCAGCAATGTTGATATTAATTTCAATTTTGTGTGTAAGATACAAGTCACCAACCTGGCAAGCAAAATTTGGCTTGACTTCAAAAAGTAATCAAAATATTGAAACATTCCTTAAAAGTCATGGCCCTTTAGCTCTGGAAAGGTATAAACTATCAGATGTCAAGAAAATGACCAACAACTTCAAAGAGAAGTTGGGACAAGGTGGTTTCGGTGCGGTGTACAAAGGAAAGTTATCCAATGGTAGAATTGTGGCTGTAAAGATGCTGAGTGTATCCAAAACAAATGGTGAAGAATTTATGAATGAGGTTGCTAGCATTAGTAGAACTTCTCATGTTAACGTCGTCTCTCTTCTTGGATTCTGTTTGAGAGGTCGCAAGAGAGTTCTTGTATATGAATTTATGTCCAATGGTTCCCTTGACAAATTCATTTACCAAACAAGAGATGAAACACTTTCAGCCTTGAGTTGGGATGTCATATATAAAATTGCAAGGGACATAGCTCGAGGGTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTCTGCGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTATTGTTTCCTTGTCTGATGTTAGAGGAACAATTGGGTATGTAGCTCCGGAGATGTGGAGTAGAAATCTTGGAAGAGTTTCGCATAAGTCTGATGTTTATAGTTATGGAATGGTGCTGCTAGAAATGGTGGGAGGAAGGAAGAACATCAATGGTGAAGCAAGTAATACAAGTGAGATATACTTCCCACACTGGGCTTACAATAAGCTTGAGATGGACAATGATTTGAGACCAGATATGGAGATGTCAACAGAAGAAAATGAGATTGCAAAGAGGTTGGCAATGGTGGGTTTATGGTGCACTCAAAGGTTTCCTAATGATAGACCTACAATGAGCAGAGTGATTGATATGTTGGAAGGCAACATGGATTCGATTCAAATCCCACCCAAACCTGTGCTTTCTTCTCCTACTAGATCGCTGCCACAATATTCTATTTCCTGA 1911 0.416 MDDKHSHLLAFALTVSCFFSIALPHSHSQPSPCAEQSYRCNISVSAIFDPPWEQIPASQCNGADTSSLLSCHVFYDNVPIESQNFTVKDINNTAHTMKVMLTPPVTDVCSPHFLNFDYQTFNNALLQYNASVHDITIFVNCHGISNFPSKRNFTCDDFLYYFEEGTEEEMLNRYPQLEVCKGRLFVAAAAPLDRYDDSDDGARVLEQALNHAFQVNYGIIPDGCTRCSQSEGTCWAYDHDEHVVSCKYCPNEYCSPKRRNWDQKRKLIILGVTGSAFAAMLILISILCVRYKSPTWQAKFGLTSKSNQNIETFLKSHGPLALERYKLSDVKKMTNNFKEKLGQGGFGAVYKGKLSNGRIVAVKMLSVSKTNGEEFMNEVASISRTSHVNVVSLLGFCLRGRKRVLVYEFMSNGSLDKFIYQTRDETLSALSWDVIYKIARDIARGLEYLHKGCNTRIFHFDIKPHNILLDENFCAKISDFGLAKLCPRNESIVSLSDVRGTIGYVAPEMWSRNLGRVSHKSDVYSYGMVLLEMVGGRKNINGEASNTSEIYFPHWAYNKLEMDNDLRPDMEMSTEENEIAKRLAMVGLWCTQRFPNDRPTMSRVIDMLEGNMDSIQIPPKPVLSSPTRSLPQYSIS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00310 636 Gene3D Transferase(Phosphotransferase) domain 1 410 617 - -
Viun4g00310 636 ProSiteProfiles Protein kinase domain profile. 335 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00310 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Viun4g00310 636 CDD STKc_IRAK 341 610 - -
Viun4g00310 636 FunFam PR5-like receptor kinase 410 620 - -
Viun4g00310 636 SUPERFAMILY Protein kinase-like (PK-like) 316 609 IPR011009 -
Viun4g00310 636 MobiDBLite consensus disorder prediction 618 636 - -
Viun4g00310 636 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Viun4g00310 636 FunFam serine/threonine-protein kinase PBS1-like 303 409 - -
Viun4g00310 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 305 625 IPR045874 GO:0004672
Viun4g00310 636 MobiDBLite consensus disorder prediction 616 636 - -
Viun4g00310 636 Pfam Wall-associated receptor kinase C-terminal 168 249 IPR032872 -
Viun4g00310 636 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Viun4g00310 636 SMART serkin_6 335 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00310 636 Gene3D Phosphorylase Kinase; domain 1 297 409 - -
Viun4g00310 636 Pfam Protein kinase domain 337 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00310 Viun-Chr4 1885483 1894006 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00310 9 634 Receptor kinase-like Gene Family AT1G66910 37.031 1.77e-124 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00310 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00310 - - vra:106756549 931.013