Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00308 ATGACAACCAACTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTACCGTGTATCAAGGCAAGCTATCCAATGGTATTCTTGTAGCTATAAAGATGTTGAACGAAACAAAAAAGAATGATGAAGAATTTATCAACGAGGTTGCCAGCATAAGTAGAACTTCTCATGTTAATATTGTCACTCTTCTTGGATTCTGTCTGGAAGGTCGCAAGAGAGTCCTCATTTACGAATTCATGTCCAATGGCTCCCTTGAGAAGTTCATTTTTAGAAAAGGCCCCGAAAGCATTGCACCCTTGAGTTGGGATATTGTTTTTCAAATTTCAATGGGTGTAGCTCAAGGGTTAGAATACTTGCACAAAGGATGCAAAACTCGAATTTTACATTTTGACATAAAACCTCATAACATCCTTTTGGATGAAAAGTTTTGTCCTAAGATATCTGATTTTGGGTTAGCAAAACTTTGTCCTAGAAATGAAAGCATCATTTCTATGTCCGAAGCCAGAGGAACAATGGGGTATGCAGCTCCAGAAGTGTTGAACACACATTTTGCAGGAGTTTCACACAAGTCTGATGTTTATAGTTTTGGAATGATGTTGTTAGAAATGGTAGGAGGAAGGAAGAACATTAATGGTGAAGCCAGCCACACTAGTGAGATATATTTTCCGAATTGGATACATAAGAGACTTCAGATGTGCACTGATTTAAGACAATATGAAGGGATAGTCCCTGAAGAGAATGAAATAGCAAAGAGATTGACCATAGTTGGTCTATGGTGCATTCAAACCTTTCCATATGACAGACCTACAATGAGAAGAGTAATTGACATGTTGGAAAGCAGCATAAATTCCCTGGAAATGCCACCAAAACCTTTGTTTTCATCTCCTACCAGATCAGTATCAGGATCTTCTTGCTCTTAA 915 0.3814 MTTNFKVKLGQGGFGTVYQGKLSNGILVAIKMLNETKKNDEEFINEVASISRTSHVNIVTLLGFCLEGRKRVLIYEFMSNGSLEKFIFRKGPESIAPLSWDIVFQISMGVAQGLEYLHKGCKTRILHFDIKPHNILLDEKFCPKISDFGLAKLCPRNESIISMSEARGTMGYAAPEVLNTHFAGVSHKSDVYSFGMMLLEMVGGRKNINGEASHTSEIYFPNWIHKRLQMCTDLRQYEGIVPEENEIAKRLTIVGLWCIQTFPYDRPTMRRVIDMLESSINSLEMPPKPLFSSPTRSVSGSSCS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00308 304 SMART serkin_6 3 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00308 304 SUPERFAMILY Protein kinase-like (PK-like) 8 277 IPR011009 -
Viun4g00308 304 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 293 IPR045874 GO:0004672
Viun4g00308 304 PIRSF ILK 3 286 - -
Viun4g00308 304 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Viun4g00308 304 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00308 304 Gene3D Transferase(Phosphotransferase) domain 1 78 290 - -
Viun4g00308 304 Pfam Protein kinase domain 6 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00308 304 FunFam PR5-like receptor kinase 78 288 - -
Viun4g00308 304 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Viun4g00308 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00308 Viun-Chr4 1868262 1869191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00308 1 291 Receptor kinase-like Gene Family AT1G66980 56.271 9.36e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun4g00308 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00308 - - gmx:100798745 496.123