Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00306 ATGGCTGCGAAAAGATTGTTCAATGATTCTGAACGAGACCCTGATGAGCCAGACGACAAACGGATAAGAAATAACACTGCTGCTACACCTTCTTTTTCTTCTGTAATAGGAGAAGTGGTCATGATAAAGAGCTTTGAGAATCTTTTCACTGCATTGGAACCTGTGCTTAAAAGAGTGGTGGGTGAGGAAGTTGAGCGAGTTATGAGACAGTGGTCACGCTCCTTTACAAGGTCTCCATCGTTGAGACTCCAAGCAATGGAGCAGCCATCAAGCCTGCATCTATGCTTCAGCAAGAGGCTTTTCCTTCCAATTTTCACAGGTAGCAGGATTCTTGACGTTGATGAGAACCTCATCAACATAGTTCTGATGGACAGAAGCAACAATAACCAAATGGTCCCCACAAGTCTCCCTCATGCCATCAAGCTCGAGATTCTTGTTATAGATGGAGATTTTTCTCCTTCTGAAAACGAGGATTGGACGAGTGATGAATTTAACAGACACATAGTGAAGGAGAGACATGGGAAGCGACCTTTACTTGCAGGAGAATTGAACTTGATCATGCGAGATGGAATTGCACCAACTGGGGACATGGAATTCACAGATAACTCTAGCTGGATTCGCTGCAGAAAGTTCAGAGTTGCAGTGAGGGTAGCACCAGGGAGTAACCAAGGACTTCGAATCCGTGAAGGAATCACTGAAGCATTTGTTGTCAAGGATCACCGTGGAGAATTGTACAAAAAACACCACCCTCCAATGCTCGATGACGAAGTGTGGCGTCTGGAAAAGATAGGTAAAGATGGAGCTTTCAACAGAAAGTTGTCTTCGCAGGGCATAAAGACAGTTCAAGAATTTCTTAAACTAGCAGTTGTTGACACTCTCAAGCTAAGAAATATTTTGGGCGTGGGGATGTCAGACAAAATGTGGGAAGTGACAATGAAGCATGCAATGACCTGTGACATAGGAAGCAAGTTGTACATTTATCGTGGACCACACTTTACTATTTTACTGGATCCAATATGCAGATTAATTAAAGCAGATATCAATGGACAGACATTTTCCAACAGAGATCAAATCTCCCATTTGAACAAGACCTATATAGACAAATTGGTGAAAGAAGCATATGCGAGATGGCCTAACTTGGAGGTGATAGATGCGGTTCTGAACGATAACATTGCTGTGTTAACTCAAGGTGATGAAACTGCTGTCTCAGTAGCCACATATGATCAGAATGAGTATTACAGTGGCCAATCTGCTAGCTATGTTGCAAATAACAACGCACAAATGGGAAGCTGTGAGTGGTCACTGAATCAAGGCTACAACACATTGGCGTTTGCTAATGGTTTTCCTTTTAATTTCTCAGCAACACAAACAGAAGGAGACATGACAGCTTCAGGTTCAAGCTCTGTGGATGTTGATGGTGCCACAACAAGGCAAAACTAG 1440 0.4292 MAAKRLFNDSERDPDEPDDKRIRNNTAATPSFSSVIGEVVMIKSFENLFTALEPVLKRVVGEEVERVMRQWSRSFTRSPSLRLQAMEQPSSLHLCFSKRLFLPIFTGSRILDVDENLINIVLMDRSNNNQMVPTSLPHAIKLEILVIDGDFSPSENEDWTSDEFNRHIVKERHGKRPLLAGELNLIMRDGIAPTGDMEFTDNSSWIRCRKFRVAVRVAPGSNQGLRIREGITEAFVVKDHRGELYKKHHPPMLDDEVWRLEKIGKDGAFNRKLSSQGIKTVQEFLKLAVVDTLKLRNILGVGMSDKMWEVTMKHAMTCDIGSKLYIYRGPHFTILLDPICRLIKADINGQTFSNRDQISHLNKTYIDKLVKEAYARWPNLEVIDAVLNDNIAVLTQGDETAVSVATYDQNEYYSGQSASYVANNNAQMGSCEWSLNQGYNTLAFANGFPFNFSATQTEGDMTASGSSSVDVDGATTRQN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00306 479 PANTHER OS02G0177800 PROTEIN 2 443 IPR012416 GO:0005516
Viun4g00306 479 MobiDBLite consensus disorder prediction 459 479 - -
Viun4g00306 479 Pfam Calmodulin binding protein C-terminal domain 323 382 IPR046829 -
Viun4g00306 479 Pfam Calmodulin binding protein-like N-terminal domain 92 240 IPR046831 -
Viun4g00306 479 Pfam Calmodulin binding protein central domain 252 318 IPR046830 -
Viun4g00306 479 MobiDBLite consensus disorder prediction 1 23 - -
Viun4g00306 479 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00306 Viun-Chr4 1853199 1857366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00306 13 377 Calmodulin-binding Proteins AT5G57580 46.092 2.98e-109 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00306 - - gmx:100803213 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00306 4 1853199 1857366 Viun4g00306 4 1853199 1857366 ECH