Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00303 ATGGCGACGCCGCTGACGGGGCTGCAGCATATGGACGGCGGCGGCGGCGGAGTGGCGGTGCTACCGAATCCGGTGAGTAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGTTTCGGCCTGTCGCTGTCGGAATCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGGTTAGCGATGGCGTTCGCCACCGGAAATTGCTCAGACATCCAGCCCCTCTTCCAACGCTATCGTTTCCTCAGATCGATGTACAGACACCACTCCAATGCTGAAGATGAGGTGATTTTCCCAGCTCTAGATATACGGGTAAAGAATGTAGCACAGACATATTCACTCGAACACCAGGGTGAAAGTGAAATTTTTGAACATCTATTTGAGCTGTTAAACTCTTCCGTCCATAATGTTGAAAGTTTTCCAAAGGAATTAGCATCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCCCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGTAGTATTCCTGTGAATATGATGACTGAATTTCTTCCGTGGCTCTCAACATCTATATCACCCGATGGATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTTCCAGAGGAAAAACTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTCGTGGTAACACAGTTGAAAATCGTGTAGATCATTCTCAGGTGCGATGTAGTCGTAATCCTCTTAGCCATCAGAATGGAAAAATAAAATGTGCATGTGAGTCCACAACAACTGGGAAAAGGAAATATTCTACATGTATCACAGATGTTTCTGATACCATCACAACACATCCTATAGATGAAATATTGTTCTGGCATAATGCGATAAAAAAAGAGTTAAATGAGATAGCAGTACAGACCAGAAAGATACAACTCTCTGGAGATTTTACTAACTTGTCAGCTTTCAATGAAAGGTTGCAATTCATCGCAGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAATTTTCTTTCCGCAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGTTCTTTAATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATACTGGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCATTAAAGTTGATTGAGCGTGTCCTGCCATGGTTGACTAGTTCGTTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCAACAATAGATTCTGCTTTAGTCACACTGTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCTTCTAGTGTGTCAGGCTGCTGTCCTGCCCAGAGAATTACTGATATTGAAGAAAATATTGTTCAATCTTCGTGTCCTGCTTCTGCATATTCAGGTAGAGATTGCTCAGTATTTGCCGAATCAGATGGGACCCAGCAAAGATCAGTGGAGCAAAACATACTGGAGGTGCACAATGAAGATGTCTCTGAAGTTTCAGAAAGTGAAAGTATTCACAAACGATGTTGCAGTTCGCGGTCTTGTTGTGTACCAGCATTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTTCACTCACTACGACCAAGTCCTTACGCTCTTTGTCTTTCACTGCTTCTGCTCCGTCCATTAATTCTAGTCTTTTTGTATGGGAAACTGACAACAGCTCATGTGATGTTGGCTCTACAGAAAGACCAATAGATACCATATTTAAATTCCATAAAGCCATACGCAAAGACCTGGAGTATTTGGACATTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATCATTCGGCAATTTAGTGGAAGGTTTCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCTGCACTTGAATCCAAAGAGACACTTCATAATGTGAGCCATTCCTACACATTGGATCATAAGCAGGAGGAAAAATTATTTGAAGATATTTCCTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGTCTTGCAGAGGACCCACATGTCAGCAGATTTAAGTGAAAATAGTTTTGGAATTCCTGATGCCAATGATAGGGATAATGTGAAAAAGTACAATGAGCTTGCTACTAAGCTGCAAGGGATGTGCAAATCTATTAGAGTAACCCTAGATCAACATATTTTTAGAGAAGAGCTTGAGCTTTGGCCACTGTTCGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACAGAGGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACCAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAACACAGGCAGAAGCTTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAAGAAAGCTTGAACCTGAATGACCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCAGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTCTATCGTGATTCTACTCTTGATCCAAGGAGAAAGGCGTATCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCTGCCCAACAGAAGTTACCCAAGGCTCCATCTGGGGAATCATCCAGTAAACAAATAGAAGGATGCTCACCTTCTTTTCGGGACCCAGAGAAACATATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGCGGCAAGTTATTTACTTGCAGATTTTGTCATGATAATGCAAGCGATCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGTATGCAGTGCCTGACTATACAGCCTGTTGGGTCTGTATGCATGTCTCCTCAATGTAATGGACTTACAATGGCAAAGTACTATTGCAACATTTGCAAATTCTTTGATGATGAAAGGAATGTTTATCACTGCCCTTTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGAATTGATTATTTTCATTGTATGAAGTGCAATTGTTGCCTGGGGATAAAATCTGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGTCCAATTTGCTGTGATGACTTGTTCACATCAAGCGCAACAGTGAGAGCTTTACCGTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGCAGCCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGATATACTCTGCCATGACTGTGACCAAAAGGGCACTTCACGCTTCCACTGGCTATATCACAAATGTGGTTCTTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAACAAATTCTAGCTGCCATTAG 3729 0.4253 MATPLTGLQHMDGGGGGVAVLPNPVSKVDSSANGGGGFGLSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYRFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFELLNSSVHNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSTSISPDGSQDLRKCLSKIVPEEKLLQKVIFTWMEGRSRGNTVENRVDHSQVRCSRNPLSHQNGKIKCACESTTTGKRKYSTCITDVSDTITTHPIDEILFWHNAIKKELNEIAVQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFRKEHAEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTEDEAQMFLKNMQLAAPTIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRITDIEENIVQSSCPASAYSGRDCSVFAESDGTQQRSVEQNILEVHNEDVSEVSESESIHKRCCSSRSCCVPALGVSRNNLGLGSLTTTKSLRSLSFTASAPSINSSLFVWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHEVLQRTHMSADLSENSFGIPDANDRDNVKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQSKMMDTWKQATKNTMFNEWLNECLKESPVSTTQAEASERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDPEKHIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMQCLTIQPVGSVCMSPQCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDQKGTSRFHWLYHKCGSCGSYNTRVIKSEATNSSCH 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00303 1242 MobiDBLite consensus disorder prediction 883 905 - -
Viun4g00303 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1121 1170 IPR013083 -
Viun4g00303 1242 Pfam Ring finger domain 1125 1167 IPR001841 -
Viun4g00303 1242 Pfam Zinc-ribbon 1173 1230 IPR039512 -
Viun4g00303 1242 CDD Hr-like 653 813 - -
Viun4g00303 1242 Pfam Hemerythrin HHE cation binding domain 651 814 IPR012312 -
Viun4g00303 1242 Pfam Hemerythrin HHE cation binding domain 54 177 IPR012312 -
Viun4g00303 1242 Pfam Hemerythrin HHE cation binding domain 303 437 IPR012312 -
Viun4g00303 1242 Pfam CHY zinc finger 997 1072 IPR008913 GO:0008270
Viun4g00303 1242 CDD Hr-like 306 435 - -
Viun4g00303 1242 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 694 1239 - -
Viun4g00303 1242 CDD RING-H2_Pirh2-like 1125 1168 - -
Viun4g00303 1242 SMART ring_2 1126 1167 IPR001841 -
Viun4g00303 1242 CDD Hr-like 49 175 - -
Viun4g00303 1242 FunFam Zinc finger protein-related isoform 1 1121 1170 - -
Viun4g00303 1242 ProSiteProfiles Zinc finger RING-type profile. 1126 1168 IPR001841 -
Viun4g00303 1242 ProSiteProfiles Zinc finger CTCHY-type profile. 1062 1125 IPR017921 -
Viun4g00303 1242 SUPERFAMILY Zinc hairpin stack 1063 1119 IPR037275 -
Viun4g00303 1242 SUPERFAMILY RING/U-box 1123 1178 - -
Viun4g00303 1242 ProSiteProfiles Zinc finger CHY-type profile. 990 1059 IPR008913 GO:0008270
Viun4g00303 1242 Gene3D nmb1532 protein domain like 647 890 - -
Viun4g00303 1242 Gene3D - 1197 1239 - -
Viun4g00303 1242 SUPERFAMILY CHY zinc finger-like 990 1054 IPR037274 GO:0008270
Viun4g00303 1242 Gene3D nmb1532 protein domain like 305 453 - -
Viun4g00303 1242 Gene3D nmb1532 protein domain like 45 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00303 Viun-Chr4 1809227 1819298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00303 1 1241 C2H2 Transcription Factor Family AT3G18290 66.005 0.0 1683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00303 K16276 - gmx:100791354 2308.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00198 3 1102735 1112752 Viun4g00303 4 1809227 1819298 PCT