Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00299 ATGTCCTTTTTCTCCAGGTTGTGCCCCTGTTTGTGCAAGGGTGGCGCAACCTCCGGCGACGGCGACGGCGACGACCACCCCGACGATCCTAGCGGGCCGGGGGACTCCTTGGACCTGATTTTCGATCTCCACACTCTCCAACTCGCTACCAATTTCTTCAGCAACCTCAACCAGCTAGGTCATGGAGGCTTTGGCCCTGTCTTCAAGGGAATGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCACTGGAATCAAGACAAGGAGTTAAAGAATTCACCAACGAAGTCATGCTATTACTCAGAATTCAGCACAAGAACTTGGTTACATTACTTGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTCTATGAGTATCTACCTAACAAAAGTCTTGATCACTTTCTCTTTGATAAGAGGAAGTCTTCATCTTTGGACTGGGCAAAACGATTCAGAATAGTTACTGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCACCAGAAAGAATCATACACAGGGACATTAAAGCTAGTAACATATTGTTGGATGACAAGTTAATTCCGAAAATTTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGGGAGGACACTCACGTGCACACATTTAAGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGAGGATATCTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCAAGATATGCGACTTGGACAAGAAAAAGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGGAGGGAGACTAATGGAATTGATTGATCCAACCCTCGGCAAATACAATGGTGATGAGGCAGCAATGTGCATCCAGCTAGGTTTGTTGTGCTGCCAAGCAAGCATAATTGAAAGACCTGACATGAATGCTGTTCATCTCATGCTCTCAAGTGATTCCTTCACTTTGCCAAGACCAGGTAAACCGGGAATTCAAGGTCGTACAGGACGTTGGACTACAACTACATCTGCTTTGACCAATACCAATGCTAGTAACACTACTAGGGCCTCAGGTGGTAGTGGTAGTTTTGTAGACGATTATTCTAGAAATTCTATATCTACCTCTTCTTTTGATGAAGGCAGATGA 1167 0.4524 MSFFSRLCPCLCKGGATSGDGDGDDHPDDPSGPGDSLDLIFDLHTLQLATNFFSNLNQLGHGGFGPVFKGMMPNGQEVAVKKLSLESRQGVKEFTNEVMLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKRKSSSLDWAKRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDKLIPKISDFGLARLFPGEDTHVHTFKISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNQDMRLGQEKADLLSYAWSLYQGGRLMELIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNAVHLMLSSDSFTLPRPGKPGIQGRTGRWTTTTSALTNTNASNTTRASGGSGSFVDDYSRNSISTSSFDEGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00299 388 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Viun4g00299 388 CDD STKc_IRAK 59 323 - -
Viun4g00299 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Viun4g00299 388 SMART serkin_6 53 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00299 388 ProSiteProfiles Protein kinase domain profile. 53 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00299 388 Gene3D Transferase(Phosphotransferase) domain 1 129 329 - -
Viun4g00299 388 Gene3D Phosphorylase Kinase; domain 1 35 128 - -
Viun4g00299 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 38 359 - -
Viun4g00299 388 Pfam Protein tyrosine and serine/threonine kinase 56 254 IPR001245 GO:0004672|GO:0006468
Viun4g00299 388 MobiDBLite consensus disorder prediction 332 369 - -
Viun4g00299 388 FunFam Cysteine-rich receptor-like protein kinase 41 129 329 - -
Viun4g00299 388 FunFam Cysteine-rich receptor-like protein kinase 2 34 128 - -
Viun4g00299 388 MobiDBLite consensus disorder prediction 341 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00299 Viun-Chr4 1778656 1782094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00299 29 340 Receptor kinase-like Gene Family AT4G11490 50.318 7.84e-111 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun4g00299 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00299 - - gmx:100790304 644.425