Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00298 ATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTCGGACAGGCCTTCTTTGACCTTGAGAATACTAACAATGAGCTGAAAAGTGACCTGAAAGATTTATACATAAATTCAGCTGTCCAAATAGATGTTTCTGGGAACCGCAAGGCTGTGGTTATTCATGTCCCCTACAGATTAAGGAAGGGATTCAGGAAGATCCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGCGGGAAGGATGTAGTCCTGATTGCCACCAGGAGGATATTGAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGTCCTCGCAGCCGCACACTCACTGCTGTGCATGAGGCAATGCTGGAGGATATTGTGTTACCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAGAATTGATGGTTCCAAGATTATGAAGGTGTTTTTGGACCCCAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTTTCAGGCAAAGATGTTGTATTTGAATATCCTACAACCGAGGCTTAG 576 0.4358 MYTSRKKIHKDKDAEPTEFEESVGQAFFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDIVLPAEIVGKRVRYRIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKFSGKDVVFEYPTTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00298 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Viun4g00298 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Viun4g00298 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00298 Viun-Chr4 1775566 1777974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00298 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 76.440 1.19e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00298 K02993 - gmx:100499757 369.007