Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00297 ATGAGACTTGCCATGTCTACTACTCCTTCAAAGAGCATCAGTGAAGAAGATAATGAACTTAGAAGAGGACCATGGAGTGTTGAAGAGGATGATCTTCTTGGCAATTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGCTTGCTACACGTTCAGGATTAAGGAGAACAGGAAAGAGTAGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTATTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATATGAAATATGAGACACAGAGAACAACAGGATTTGTAGAATTTTTCAAGGGTCTACAGATGACAAGATGTGTTCTTAAAGCACAAGAATCATCTCCTTCAGCCATGTCACTCCAAGACCAAGAAATTCCTATGCCTTTTGATGGTGGTTCTCATTATTCATCATTTCGGATTGAGACAACACCAGAAACACAAATCACTTGCCAGCGAGGTCTCAATCATTTGAATCAGCATGAGCAGAACTCAGACTCTGAACACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATCCAATATATGACTCAGCCTTTGGGGTGGTGCACTACAAATCAATTCCAGGCCCTAGACACCTATGATTTTGGCACCTGTTCATATGATGGCTACAACATAGATAACAGTGCCTATGACATGGATTCATTCAACCTGGGAGCCACAATGGATGCTGAGAATCTGGAACTCCCAGTGATAACAGAAACCAACTCGCTAAATATGGAATCTGAATGCAGTACAAATGATGAATTATGGCAATTTATGAACATATAA 927 0.3991 MRLAMSTTPSKSISEEDNELRRGPWSVEEDDLLGNYIANHGEGRWNLLATRSGLRRTGKSSRLRWLNYLKPDVKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYMKYETQRTTGFVEFFKGLQMTRCVLKAQESSPSAMSLQDQEIPMPFDGGSHYSSFRIETTPETQITCQRGLNHLNQHEQNSDSEHNNGSSISNSESVNIQYMTQPLGWCTTNQFQALDTYDFGTCSYDGYNIDNSAYDMDSFNLGATMDAENLELPVITETNSLNMESECSTNDELWQFMNI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00297 308 FunFam Myb transcription factor 22 74 - -
Viun4g00297 308 Gene3D - 77 136 - -
Viun4g00297 308 MobiDBLite consensus disorder prediction 1 22 - -
Viun4g00297 308 CDD SANT 24 69 IPR001005 -
Viun4g00297 308 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 211 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun4g00297 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Viun4g00297 308 Gene3D - 21 74 - -
Viun4g00297 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Viun4g00297 308 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Viun4g00297 308 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Viun4g00297 308 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Viun4g00297 308 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Viun4g00297 308 FunFam MYB transcription factor 78 120 - -
Viun4g00297 308 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Viun4g00297 308 CDD SANT 79 118 IPR001005 -
Viun4g00297 308 SMART sant 21 71 IPR001005 -
Viun4g00297 308 SMART sant 74 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00297 Viun-Chr4 1772530 1774231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00297 17 157 MYB Transcription Factor Family AT1G68320 65.248 2.58e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00297 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00297 K09422 - gmx:100778425 460.685