Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00296 ATGGCTGAATTCACAGAAAATTTGCAACTTCAAAGCATTAGACCCTCCTCTTTTCCATTCTTAGACATTGATCCAAGCATGGAACTCATAAACCAATTCATTGGGATCAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCATTTTCCTGTGACACCTTCTTGGGCCCTCAAGAACCTGAGTTTCCGGGAAACTTGGACGAAAATTTCCCTGCCCTTGTTCATCATGTCAACCACAATGCACTTCCTGTTTCTCTCCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAAAAAGAGGAAATCACTGGATCTTCCAGAGACTAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATAAAACAAGGTTCTGGAAAAGGAAAGAGAGCAAAAAGCAATGTGACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTAAGAGCCAGAAGAGGTCAAGCTACTGATAGCCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAACATTGTTCCAGGATGTTACAAGACCATGGGCATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTAGAGTTCCTTTCTCTGAAACTCACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAGGTATAAGAGAGAAGGGTATGGAGGAGTTTCTTGCTTTCAACCAAGTTGGCCACTTTGA 822 0.4197 MAEFTENLQLQSIRPSSFPFLDIDPSMELINQFIGINQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNLDENFPALVHHVNHNALPVSLPIFQAENEIHEGKKRKSLDLPETSSANSTPAVSESGSKIKQGSGKGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGRYKREGYGGVSCFQPSWPL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00296 273 SMART finulus 168 218 IPR011598 GO:0046983
Viun4g00296 273 CDD bHLH_AtBPE_like 152 237 - -
Viun4g00296 273 MobiDBLite consensus disorder prediction 104 168 - -
Viun4g00296 273 MobiDBLite consensus disorder prediction 140 168 - -
Viun4g00296 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Viun4g00296 273 FunFam transcription factor BEE 3-like 159 230 - -
Viun4g00296 273 Gene3D - 162 224 IPR036638 GO:0046983
Viun4g00296 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 239 IPR024097 GO:0006355
Viun4g00296 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Viun4g00296 273 Coils Coil 239 259 - -
Viun4g00296 273 MobiDBLite consensus disorder prediction 112 131 - -
Viun4g00296 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00296 Viun-Chr4 1758872 1760979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00296 65 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.917 3.73e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun4g00296 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00296 - - gmx:100806942 490.345