Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00289 ATGGAGGAAAATCTGCCTCCTGGATTCAGGTTTCATCCTACGGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAGAGCTATAGCAGTCGTTGATCTCAACAAATCTGAACCATGGGACCTACCAGGTAAGGCTTCCATGGGGGAAAAGGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCCACAGAATCAGGTTACTGGAAAACAACAGGAAAAGACAAAGAAATTTTTCGTACTGGTGTTTTGGTCGGAATGAAGAAAACCCTAGTCTTCTATAGGGGTAGAGCTCCAAGGGGAGAGAAAAGTAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACCTGAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAGAAGAGCTTACTGGTGAAGAAACCACAGCAAGCAAACTCATCACAACCAGATTCTCCATGTGACACAGTCTCAATGGTGAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAACAGCATTGCAAATTCTTCAGGGCACAGTTTTATGAATGCTGATCTGAGTAATAACAGTGTTAACACAAACATGAACTTGGCCATGAATTGGGCAGTTGCAAGTGAGGTTCAGGTTCAGGTTCCCTCTCTCACATCTCTGCCATGGCCTTCTGGGTTGCTGAGTCCAAGTATTTCTTCTGTAAATTCTTTGCTTCTCAAGGCATTGCAACTTAGAAATTATCAACAGAGAGAAGCAGCAGCAGTAGCTACAGATCATTTTGCACCATTTATGGGTGAAGGACTTTCCCAAGTTGGAACTGAACTAAGTTCAAATCTGACAGCATCATCTTCTTCAAAAGTTCAAGAGTGTTTGCCACAGCAGCAACTACAACAACAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 975 0.4277 MEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSRAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRTGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLLVKKPQQANSSQPDSPCDTVSMVNEFGDVELPNLNSIANSSGHSFMNADLSNNSVNTNMNLAMNWAVASEVQVQVPSLTSLPWPSGLLSPSISSVNSLLLKALQLRNYQQREAAAVATDHFAPFMGEGLSQVGTELSSNLTASSSSKVQECLPQQQLQQQQEQPFNLDSIW 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00289 324 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Viun4g00289 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 238 - -
Viun4g00289 324 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Viun4g00289 324 FunFam NAC domain-containing protein 100-like 14 154 - -
Viun4g00289 324 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Viun4g00289 324 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00289 Viun-Chr4 1707815 1709829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00289 1 324 NAC Transcription Factor Family AT3G18400 56.509 1.48e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g00289 NAM 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00289 - - pvu:PHAVU_004G156700g 507.679