Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00282 ATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCACGAGCATGTGAGAGCTGTTTAAAAGTAAGAGCACGGTGGTATTGTGCTGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCCGCAAACCAATTAGCACGCAGGCACGAAAGGGTTAAGCTTCAAACCGCATCCTCTAAGGTCAACTACTCATTGACCCTTAATCATAACAATAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCACGCCACAACAGCAAGCACAAGAAAATACACGAAGAAGGAGAAGAAGAAGAAGTGTTTTTCAAGAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCATAATGATGAGAGTGAGGAGCAGCTGTTGTGTCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAGTGAAGTGAAGGAAGAGGTTTTGGCTGTTGAAGAAGTGTTTGACTTGGAAAATTTTTCTTCCGAGCTTCTACCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTTCTTGGAAACGGAGCTGATGAGGATTCATCTGAGCACGTGAAAGGATCAGAATTGCTGCTTGATTGCAAAGAAGAAGATGAAGAAATGGATGCATGTGTTGGTGGAGTTGGAGCCAAAGAAGCAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATGCTGACACACCTTGCCATTTGGATTCGATGATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGAATCAGAATCACTTGCTCAGGAACAAGAAGAGGAAATGAGTACAAAGAGAACCAACAAGAAGGACATGTTTTTGAGGCTAAACTATGAAGATGTTATAACTGCTTGGGCCAGTCAAGGTTCTCCATGGACAACAGGAACCCCACCAAACTTCAACTCTGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGGAGGGGATGTTCAGTGCTGTTATGGTGAAATGATAAGTTTAAGAGGGCATGCAGATGGTGGAAGAGAAGCAAGAGTTTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAACGCAGAGAAAAGACCTAGAATGAAAGGACGATTTGTGAAGAGAACGTCCTTTGTTGGAGCCACTGCTTAG 1215 0.437 MKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLARRHERVKLQTASSKVNYSLTLNHNNKVAWHSGFTRKARTPRHNSKHKKIHEEGEEEEVFFKNTISLPLVPELGSEEALHNDESEEQLLCRVPVFDAELCSVYSEVKEEVLAVEEVFDLENFSSELLPSDMDLAEFAADVESFLGNGADEDSSEHVKGSELLLDCKEEDEEMDACVGGVGAKEAMVKVKDEEELDADTPCHLDSMILDMNSEAFNWNDIVESESLAQEQEEEMSTKRTNKKDMFLRLNYEDVITAWASQGSPWTTGTPPNFNSDDCWPDFLGSNGGDVQCCYGEMISLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00282 404 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Viun4g00282 404 SMART bboxneu5 10 57 IPR000315 GO:0008270
Viun4g00282 404 Pfam B-box zinc finger 12 57 IPR000315 GO:0008270
Viun4g00282 404 CDD Bbox1_BBX-like 14 55 - -
Viun4g00282 404 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 398 - -
Viun4g00282 404 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Viun4g00282 404 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00282 Viun-Chr4 1651976 1654828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00282 4 396 C2C2-CO-like Transcription Factor Family AT1G25440 44.286 2.92e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun4g00282 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00282 - - gmx:100802113 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00220 3 1253607 1255200 Viun4g00282 4 1651976 1654828 PCT