Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00279 ATGGAATGTAAGAGAGGAAAAGAGAAGGTTCCAGGCAAAGAAAAAAACGTAAAAACAGTAAGGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTGAAGAAGAAGAAGAAGATGATAAGTTGTTGAGCAATGGGTATGAGTTAAGTGGTTGTTGCTCCAAGAGGGTTGTGAAGGAAATCTTGGTTCCATGCATGCAAAGCAAGTTACAAGAAGAGAATTCTTCAGAAGATGTAAACAGTGAAAAGATGAAAGCAAGTGCAATCCATTTTTCAAGTAGGAGGATGAGGAAACCATCAAGCATGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAATATGTGGCAGAAATTAGAGATCCTATTCAAGGGTTGAGAGTGTGGCTTGGTACATTTGATACTGAACAAGAAGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGCTCGAGAAAAAGGGATGATGCAGTGGCTTTTGACAGTTCCAAAGAAGTGTTGTTTCATGCATCTCCATCATCAGTGCTTGATGTCTGCTGCACTACAAAAGCTTCACTAGATGTTAGTGACCCGAATGATTCAGTCAAAGAAAAGTTCAATGTGGAAAAGGTTGGTGAAGATGTGGAACCAGTTAACAGTGAAGATAATTCAACACAACTTTTGCTGGAGGAGCCAGTTATGGCATCATTGTTTGGTTGTGATGGTTTCTATTTGGATGAAGCAGAGAAAAGGGGAATTTTGCTTGATAATGAGTTTTATAATTTCTTGGACAATGACATCAAAGGTGGTTTTATGTGGAATGTGGAACATGGAGAAGCCACTGTTCTTCCCCCTGTGGACAGTGCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAGATTGGGAAAGCTCATAA 912 0.3936 MECKRGKEKVPGKEKNVKTVRKIRIVYTDPDATDYSSEEEEEDDKLLSNGYELSGCCSKRVVKEILVPCMQSKLQEENSSEDVNSEKMKASAIHFSSRRMRKPSSMYKGVQRRKWGKYVAEIRDPIQGLRVWLGTFDTEQEAAMAYERKKNEFESSRKRDDAVAFDSSKEVLFHASPSSVLDVCCTTKASLDVSDPNDSVKEKFNVEKVGEDVEPVNSEDNSTQLLLEEPVMASLFGCDGFYLDEAEKRGILLDNEFYNFLDNDIKGGFMWNVEHGEATVLPPVDSAFDELAWIDETLDWESS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00279 303 Pfam AP2 domain 107 154 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 ProSiteProfiles AP2/ERF domain profile. 106 166 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 CDD AP2 105 148 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 SMART rav1_2 106 172 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Viun4g00279 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 169 - -
Viun4g00279 303 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Viun4g00279 303 SUPERFAMILY DNA-binding domain 105 153 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00279 Viun-Chr4 1630847 1634384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00279 15 160 AP2-EREBP Transcription Factor Family AT1G68550 41.176 1.79e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g00279 AP2 2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00279 - - pvu:PHAVU_004G157600g 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00279 4 1630847 1634384 Viun4g00279 4 1630847 1634384 ECH