LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00236	ATGACTGAAACTAAGTCAACGAGTAAGAATGTCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGATATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGAGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAATGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGGCCTCCTCAGTCAAAATAATTTTATTTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACTTTTCGGATTGTATCTTTTACTGATACAGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCCTCAGTGGCTGTGAATCAGAAAAAGAACCTTCAAGCTGAATGCAATTCTTCTGGCTCCAAATTGGAGCCCAATCCCTCATCTGCAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTTCTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAATTGCTGTGGGCAGAGTGAAGCTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGCGATCTCGATCTAAATGTTGTTTCGGTGCCTGATTTAAACGAAGAGCTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAATGGCTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCTCAGACATGGAACCATGGACAAACCGGAGAAGTTCCGGCCGTTGATTCACGCGGAGACGCAAGCAGGAAAAGGAAAGCTAGCGCAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTCTACGCCCTTCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAGTTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAAGTTAA	1947	0.4314	MTETKSTSKNVKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTASSVKIILFEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECNSSGSKLEPNPSSADSGFKVRDLGKILHLSWAQEQGSFEGFCCADKRNCCGQSEAIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKASANEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSS	648

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun4g00236	648	Pfam	Fibronectin type III domain	262	343	IPR003961	GO:0005515
Viun4g00236	648	Gene3D	Immunoglobulins	244	355	IPR013783	-
Viun4g00236	648	SUPERFAMILY	Fibronectin type III	262	342	IPR036116	GO:0005515
Viun4g00236	648	MobiDBLite	consensus disorder prediction	1	16	-	-
Viun4g00236	648	MobiDBLite	consensus disorder prediction	1	45	-	-
Viun4g00236	648	MobiDBLite	consensus disorder prediction	496	555	-	-
Viun4g00236	648	CDD	FN3	262	351	IPR003961	GO:0005515
Viun4g00236	648	MobiDBLite	consensus disorder prediction	501	516	-	-
Viun4g00236	648	Pfam	PHD - plant homeodomain finger protein	58	176	IPR032881	-
Viun4g00236	648	MobiDBLite	consensus disorder prediction	523	539	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00236	Viun-Chr4	1330479	1338953	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00236	54	639	PHD Gene Family	AT3G24440	49.834	0.0	531

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00236	-		-	gmx:100780157	1239.94

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun4g00236	4	1330479	1338953	Viun4g00236	4	1330479	1338953	ECH
	Viun3g00246	3	1379591	1388161	Viun4g00236	4	1330479	1338953	PCT

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