Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00236 ATGACTGAAACTAAGTCAACGAGTAAGAATGTCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGATATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGAGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAATGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGGCCTCCTCAGTCAAAATAATTTTATTTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACTTTTCGGATTGTATCTTTTACTGATACAGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCCTCAGTGGCTGTGAATCAGAAAAAGAACCTTCAAGCTGAATGCAATTCTTCTGGCTCCAAATTGGAGCCCAATCCCTCATCTGCAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTTCTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAATTGCTGTGGGCAGAGTGAAGCTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGCGATCTCGATCTAAATGTTGTTTCGGTGCCTGATTTAAACGAAGAGCTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAATGGCTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCTCAGACATGGAACCATGGACAAACCGGAGAAGTTCCGGCCGTTGATTCACGCGGAGACGCAAGCAGGAAAAGGAAAGCTAGCGCAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTCTACGCCCTTCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAGTTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAAGTTAA 1947 0.4314 MTETKSTSKNVKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTASSVKIILFEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECNSSGSKLEPNPSSADSGFKVRDLGKILHLSWAQEQGSFEGFCCADKRNCCGQSEAIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKASANEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00236 648 Pfam Fibronectin type III domain 262 343 IPR003961 GO:0005515
Viun4g00236 648 Gene3D Immunoglobulins 244 355 IPR013783 -
Viun4g00236 648 SUPERFAMILY Fibronectin type III 262 342 IPR036116 GO:0005515
Viun4g00236 648 MobiDBLite consensus disorder prediction 1 16 - -
Viun4g00236 648 MobiDBLite consensus disorder prediction 1 45 - -
Viun4g00236 648 MobiDBLite consensus disorder prediction 496 555 - -
Viun4g00236 648 CDD FN3 262 351 IPR003961 GO:0005515
Viun4g00236 648 MobiDBLite consensus disorder prediction 501 516 - -
Viun4g00236 648 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Viun4g00236 648 MobiDBLite consensus disorder prediction 523 539 - -
Viun4g00236 648 ProSiteProfiles Fibronectin type-III domain profile. 259 356 IPR003961 GO:0005515
Viun4g00236 648 PANTHER VIN3-LIKE PROTEIN 2-RELATED 6 643 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00236 Viun-Chr4 1330479 1338953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00236 54 639 PHD Gene Family AT3G24440 49.834 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00236 - - gmx:100780157 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00236 4 1330479 1338953 Viun4g00236 4 1330479 1338953 ECH
Viun3g00246 3 1379591 1388161 Viun4g00236 4 1330479 1338953 PCT