Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00226 ATGAGGAAGAAAACCTATTCCTTCCACTTCTCACTCTCACTCTCACTCTCTCTTCTTCTCTTCATCGTTGTGGTTGCGCAGTCACTGTGTACCTCTGAAGCAATCTCCCACAATGGGCCTCTCACCGACGCGGAAGCTTCCTACATCAAGCAGCGGCAGCTTCTGTACTACAAGGACGAGTTCGGTGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACGACCGTTTGAGAAACGCTTACATAGCGCTACAAGCATGGAAGCAGGCCATTCTGTCTGATCCCAAAAACCTCACGCTAGACTGGGTGGGGCCCGATGTCTGCAACTACAGCTACGTCTTCTGCGCTCAGGCACTGGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATATCTCCCGGAGGAGCTCGGCCTGCTCACTGACCTTGCGCTCCTCCACATCAACACCAACCGCTTCTGCGGCACCGTGCCGCACAAGTTCGACAAGCTCAAACTCCTCTTCGAGCTGGATCTCAGCAACAACCGGTTCGCCGGAAAGTTCCCCGAGGTGGTGCTGCATCTGCCGCAGCTCAAGTTCCTGGATCTGAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTCGACAAGGACCTCGACGCCATTTTCATCAACGACAACCGCTTCGTGTTCGACCTGCCGGAGAACTTTGGCAACTCGCCCGTGTCGGTGATCGTGCTGGCCAACAACCGCTTCCACGGCTGCGTGCCGGCTGGAATCGGTAACATGAAGCGTCTGAACGAGATTATTCTGATGAACAACGCGTTCAGGTCGTGCTTCCCTGAGGAGATAGGGTTGTTGAAGAATTTGACGGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGTCCTTTGCCTGACGCCCTCGGAGGCGCCGTGAGTTTGGAGCAGCTCAATGTGGCTCATAATTTACTCTCTGGGAAGATTCCCGAGAGCATTTGTAAGCTTCCCAATCTCCAGAACTTTACTTTCTCTTACAATTACTTCACTGGCGAACCGCCTCGGTGTCTCGCTTTGCCGGCGGCTGACGACCGCCGCAACTGCTTATCGGCCAGGCCGTACCAGCGCCCCGCAGGACAATGTAAGTCGTTTTTGTCACACCCTGTCGATTGCAAGTCTTTTAGGTGTAAGCCTTTTGTTCCTACATTGCCGCCTCCTCCTCCTCCGTCACCACCATTGCCATCGCCGCCACCGTCGCCTGTTTATGTCCCCCGTTCCCCTCCGCCACCACCGCCGGTGTACTCGCCACCACCACCACCTCCAGTGTATTCGCCTCCACCGCCGCCTCCACCGCCTCCACCGCCGCCACCTTCACCACCTCCGCCTTCACCGCCACCGCCAGTATATTCTCCTCCTCCACCCCCACCTTCACCACCGCCACCATCACCACCTCCGCCATCCCCGCCACCGCCAGTCTATTCGCCACCTCCTCCTCCTCCATCCCCGCCACCACCAGTCTACTCGCCACCTCCTCCTCCACCTTCACCGCCGCCACCTTCACCGCCACCGCCCTCACCAGTTTATTGTGTAAGGTCTCCGCCACCACCTTCACCCCCTCCGCCATCACCTCCACCTCCACCAAGTCCTGTGTTCTCCCCACCACCACCTGTGCAATACTACTATAGTCCACCACCGCCACCGCAAAACTCACCTCCACCTCCCCCACCACACTCACCGCCTCCACCACACTCACCGCCCCCACCGCACTCACCGCCGCCTCCAGTCTATCCCTATCTGTCACCGCCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCAGTCCATTCACCACCACCACCATCTCCTCCACCTTGTATAGAACCGCCACCACCACCTCCCCCCTGTATAGAACCGCCTCCGCCTCCGCCATCACCACCACCACCTTGTGAAGAGCATTCACCGCCACCACCATCACCACATCCTGCACCTTACCATCCACCTCCATCACCATCACCACCACCTCCCCCAGTTCAATACAGTTCTCCGCCGCCACCATCTTCGCCACCACCAGCACCTGTTTATTATTACAACTCACCACCGCCCCCACCTCCGTCGTCTCCACCACCAGCCCCTGTATATGAAGGGCCTTTGCCACCCGTCATAGGAGTCTCATATGCATCTCCTCCTCCACCTCCCTTTTATTGA 2223 0.5767 MRKKTYSFHFSLSLSLSLLLFIVVVAQSLCTSEAISHNGPLTDAEASYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENDRLRNAYIALQAWKQAILSDPKNLTLDWVGPDVCNYSYVFCAQALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPEVVLHLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPENFGNSPVSVIVLANNRFHGCVPAGIGNMKRLNEIILMNNAFRSCFPEEIGLLKNLTVFDVSFNQLLGPLPDALGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTFSYNYFTGEPPRCLALPAADDRRNCLSARPYQRPAGQCKSFLSHPVDCKSFRCKPFVPTLPPPPPPSPPLPSPPPSPVYVPRSPPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPVYCVRSPPPPSPPPPSPPPPPSPVFSPPPPVQYYYSPPPPPQNSPPPPPPHSPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPPCEEHSPPPPSPHPAPYHPPPSPSPPPPPVQYSSPPPPSSPPPAPVYYYNSPPPPPPSSPPPAPVYEGPLPPVIGVSYASPPPPPFY 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00226 740 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 264 359 - -
Viun4g00226 740 PRINTS Proline rich extensin signature 447 468 - -
Viun4g00226 740 PRINTS Proline rich extensin signature 435 447 - -
Viun4g00226 740 PRINTS Proline rich extensin signature 410 426 - -
Viun4g00226 740 Gene3D Ribonuclease Inhibitor 84 373 IPR032675 -
Viun4g00226 740 FunFam Leucine-rich repeat extensin-like protein 1 85 246 - -
Viun4g00226 740 SUPERFAMILY L domain-like 85 366 - -
Viun4g00226 740 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 569 - -
Viun4g00226 740 MobiDBLite consensus disorder prediction 642 740 - -
Viun4g00226 740 Pfam Leucine rich repeat 155 212 IPR001611 GO:0005515
Viun4g00226 740 MobiDBLite consensus disorder prediction 445 606 - -
Viun4g00226 740 MobiDBLite consensus disorder prediction 611 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00226 Viun-Chr4 1296542 1299574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00226 32 506 Leucine-rich Repeat extension Gene Families AT3G24480 67.227 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00226 - - gmx:106799218 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00226 4 1296542 1299574 Viun4g00226 4 1296542 1299574 ECH