Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00221 ATGGACGACATGGAAGACGACGCAAGGTACCCTCCCAAGTCATTCTCCCTCAACCGTCAGAACCCCTCCCACCGACACAAACACCCCGCACGCGCCGCTCCTTACCACCGCCCAATGCCCACGCGCTACGACCAGCCCATGGTCGACGACGACGATGACGACGATGAAAACGAACCCGAAGATTTCAACGACGACAACGACGAAGGCGAAAACGGGTACGACGAAAACGACGTCGTGGGGTATCCCCGGATCCCGAAGAAGCGCAAGGTGGTAGTCGCGCCAGGCTCCTACGAATTCGCGCCACGTTTCAAAGTGTCGTACGGTTCGCGTGGTTCGGGCTCTTCCGGTGAAGAGTGGAGCGAGCACGAGACTTTCGTGCTGCTGGAGGTGTGGGGGGACAAGTTCCTCCAGCTCGGTAGGAACAGCTTAAGGTCCGAGGAATGGCACGAGGTTGCCGAAAAGGTGTCGGAGGAATTGAAGACAGAGAGAAGCGTGACGCAGTGTAGGAGCGTGCTGGACAAGCTGAAGAGAAAGTACAAGAAGGAGAAAACGAAAATGGATGAAATGGGAATGGGCTCTTGCAAATGGCCCTACTTCAAGAAGATGGACATGTTGATGGCATCCTCTGCAAGGCAAGAGTATGGCCTTGCGTGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGATTTGATGAGATGAGGGATAGTCCAGGGGAGTCTGAGAGTGATGATGATGAGGAAGAAGAGGAGTTTGGTGGTGGCGGTGCTGCTGCTGCGGAGGAAGAGGAGGATGAAACATCGTTCCGTGTGTTGGCGGATTCGATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTTAACAGGGAGTTGGAGCTGCAGAAGAAGCAGATTCTCGAGAGGGCGCAGGCTGAGATTGCCAAAATTCAGGAAGGGGATGAGGAGGATACCGACACTTCCACGGAGAATCTCAGTGAATGA 1059 0.5335 MDDMEDDARYPPKSFSLNRQNPSHRHKHPARAAPYHRPMPTRYDQPMVDDDDDDDENEPEDFNDDNDEGENGYDENDVVGYPRIPKKRKVVVAPGSYEFAPRFKVSYGSRGSGSSGEEWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVSEELKTERSVTQCRSVLDKLKRKYKKEKTKMDEMGMGSCKWPYFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDDDEEEEEFGGGGAAAAEEEEDETSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQEGDEEDTDTSTENLSE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00221 352 Gene3D - 119 181 - -
Viun4g00221 352 Pfam Myb/SANT-like DNA-binding domain 118 204 IPR044822 -
Viun4g00221 352 MobiDBLite consensus disorder prediction 333 352 - -
Viun4g00221 352 MobiDBLite consensus disorder prediction 247 271 - -
Viun4g00221 352 Coils Coil 292 334 - -
Viun4g00221 352 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 108 339 IPR044823 -
Viun4g00221 352 MobiDBLite consensus disorder prediction 1 80 - -
Viun4g00221 352 MobiDBLite consensus disorder prediction 238 278 - -
Viun4g00221 352 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00221 Viun-Chr4 1249752 1253045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00221 119 341 Trihelix Transcription Factor Family AT1G54060 31.136 3.57e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun4g00221 Myb_DNA-bind_4 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00221 - - gmx:100790166 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00221 4 1249752 1253045 Viun4g00221 4 1249752 1253045 ECH