Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00215 ATGCCTAGTCGATCAACGGGAGTTATAGCCCAAGATTGGGACCCTATCGTTCTGCACAAGGCCAAGCCCAAGGCCCAGGACCTCCGCAATCCCAAGGCCGTGAACCAGGCGCTCCGGTCCGGCGCGGAGGTGCTCACGGTCAAGAAGTTTGACGCCGGTTCGAACCGGAAGGCCGGCGGTCCGGCAGTGAACCCGAGGAAGCTGGAGGAGGGAACGGAACCAGCTGCGTTGGAGCGCGTGGCGGGGGAGGTTCGGCATGCGATCCAGAAGGCGCGTTTGGAGAAGAAGCTGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGAACGCAGGTGGTGCAGGAGTACGAAAATGGCAAAGCGGTGCCTAACCAGGCCGTGCTGGCCAAGATGGAGAGGGTTCTCGGTGTCAAGCTCAGGGGCAAAATCGGAAAAAAAATAACTCTGATCTTAACCAACAAGAAGAAGAGATTTGAAAGTGTTTTGTGGACAGTCTTCATTGTTGAGTAG 510 0.5745 MPSRSTGVIAQDWDPIVLHKAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGGPAVNPRKLEEGTEPAALERVAGEVRHAIQKARLEKKLSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGKKITLILTNKKKRFESVLWTVFIVE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00215 169 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Viun4g00215 169 Pfam Helix-turn-helix 88 139 IPR001387 -
Viun4g00215 169 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Viun4g00215 169 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Viun4g00215 169 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 142 - -
Viun4g00215 169 Coils Coil 88 110 - -
Viun4g00215 169 Gene3D - 71 158 IPR010982 GO:0003677
Viun4g00215 169 SMART mbf_short4 87 142 IPR001387 -
Viun4g00215 169 CDD HTH_XRE 87 139 IPR001387 -
Viun4g00215 169 FunFam Multiprotein bridging factor 1 72 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00215 Viun-Chr4 1224565 1229388 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Viun4g00215 MBF1 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00215 K03627 - twl:119996545 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00215 4 1224565 1229388 Viun4g00215 4 1224565 1229388 ECH