Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00213 ATGCCCGGTGCTGAAAGAGCAAAGATTATGCTGAAATGGGCACAACTAATTGAACAGAACGTGGAAGAAATAGCAGCATTGGACACCATTGATGGAGGAAAGTTATTCAGTTGGTGTAAAGCTGTGGATGTTCCTGAAGCCTGCAACATCCTGCGTTACTATGCTGGCGCTGCTGATAAAATTCATGGAAATGTGTTCAAAACATCTCGTGACCTCCACTTGTATTCTCTTATGGAACCTGTCGGTGTTGTTGGTCACATCATCCCTTGGAATTTCCCTACGGTCATGTTCTTCGCCAAGGTTGCCCCGGCCTTGGCTGCTGGTTGCACCATGGTCATCAAGCCTGCTGAACAAACACCTCTCTCAGCACTCTTCTATGCTCATCTTGCTAAGTTGGGTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAACTGCAGGGGCTGCAATAAGCTCACACATGGACATTGATGCGGTCAGTTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCAGCCTTGAGCAATTTGAAACCTGTTTCTCTTGAACTAGGAGGAAAGTCACCAGTGTTGATTTTTGATGATGCTGATATAGACAAAGCTGTTGATCTTGCTCTCTTTGGCATCCTCCACAACAAGGGAGAAATCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATATATGATGAATTTGAGAAAAGGGTTGTGGAGAAGGCTAAAACCTGGGTAGTAGGAGACCCTTTTGATCCAAAAGTTCAACAGGGACCCCAAACTAGTAAGACACAATTTGATAAAATTCTTTCCTATATTGATCATGGAAAGAGTGAAGGAGCCACACTTTTGACTGGGGGTAAGCCAGTGGGGAACAAGGGATACTACATTGAGCCAACCATTTTCATCAATGTTAAGGAGGAGATGCTGATCGAACAAGAGGAAATATTTGGACCTGTGATGACACTTTCTAAGTTCAAGACCATTGATGATGCAATTAAGAAAGCCAACAGCTCCAAATATGGCTTAGCAGCAGGGATTGTGACCAAGAACTTGGACATTGCAAACACTGTGTCAAGGTCAATCCGTGCAGGAATAATTTGGATCAACTGCTTCTTTGCATTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGCTTGGAAGCACTTCATAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTGCATGGCTTTGA 1272 0.4332 MPGAERAKIMLKWAQLIEQNVEEIAALDTIDGGKLFSWCKAVDVPEACNILRYYAGAADKIHGNVFKTSRDLHLYSLMEPVGVVGHIIPWNFPTVMFFAKVAPALAAGCTMVIKPAEQTPLSALFYAHLAKLGGIPDGVLNVVPGFGSTAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADIDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKRVVEKAKTWVVGDPFDPKVQQGPQTSKTQFDKILSYIDHGKSEGATLLTGGKPVGNKGYYIEPTIFINVKEEMLIEQEEIFGPVMTLSKFKTIDDAIKKANSSKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSAWL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00213 423 Pfam Aldehyde dehydrogenase family 1 413 IPR015590 GO:0016491
Viun4g00213 423 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 1 210 - -
Viun4g00213 423 FunFam Aldehyde dehydrogenase, putative 385 411 - -
Viun4g00213 423 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 217 228 IPR016160 GO:0016491
Viun4g00213 423 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 414 - -
Viun4g00213 423 SUPERFAMILY ALDH-like 1 419 IPR016161 GO:0016491
Viun4g00213 423 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 189 196 IPR029510 GO:0016491
Viun4g00213 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 193 382 IPR016163 GO:0016620
Viun4g00213 423 FunFam Aldehyde dehydrogenase3 193 382 - -
Viun4g00213 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 411 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00213 Viun-Chr4 1198841 1201632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00213 1 423 Aldehyde Dehydrogenase Gene Family AT3G24503 68.632 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00213 K12355 - gmx:100784449 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00260 3 1465331 1470051 Viun4g00213 4 1198841 1201632 PCT