LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00212	ATGTCTTCTGCTACATACCCAACAAAACTTGCTTACAACTTCAAGTGGACAAACATGGCTACTCCCACAGTAAAGTTTACCAAGCTTTTCATCAATGGAGAATTTGTAGATTCTGTTTCAGGGAAAACGTTTGAGACTGTTGATCCAAGAACAGAGGAAGTGATTGCTGAAATAGCAGAAGCTACCAAAGAAGATGTTGATATTGCAGTGAAGGCTGCACGTGAAGCATTTGATTGTGGTCCATGGCCACGCATGCCCGGTGCTGAAAGAGCAAAGATTATGCTGAAATGGGCACAACTAATTGAACAGAACGTGGAAGAAATAGCAGCATTGGACACCATTGATGGAGGAAAGTTATTCAGTTGGTGTAAAGCTGTGGATGTTCCTGAAGCCTGCAACATCCTGCGTTACTATGCTGGCGCTGCTGATAAAATTCATGGAAATGTGTTCAAAACATCTCGTGACCTCCACTTGTATTCTCTTATGGAACCTGTCGGTGTTGTTGGTCACATCATCCCTTGGAATTTCCCTACGGTCATGTTCTTCGCCAAGGTTGCCCCGGCCTTGGCTGCTGGTTGCACCATGGTCATCAAGCCTGCTGAACAAACACCTCTCTCAGCACTCTTCTATGCTCATCTTGCTAAGTTGGGTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAACTGCAGGGGCTGCAATAAGCTCACACATGGACATTGATGCGGTCAGTTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCAGCCTTGAGCAATTTGAAACCTGTTTCTCTTGAACTAGGAGGAAAGTCACCAGTGTTGATTTTTGATGATGCTGATATAGACAAAGCTGTTGATCTTGCTCTCTTTGGCATCCTCCACAACAAGGGAGAAATCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATATATGATGAATTTGAGAAAAGGGTTGTGGAGAAGGCTAAAACCTGGGTAGTAGGAGACCCTTTTGATCCAAAAGTTCAACAGGGACCCCAAACTAGTAAGACACAATTTGATAAAATTCTTTCCTATATTGATCATGGAAAGAGTGAAGGAGCCACACTTTTGACTGGGGGTAAGCCAGTGGGGAACAAGGGATACTACATTGAGCCAACCATTTTCATCAATGTTAAGGAGGAGATGCTGATCGAACAAGAGGAAATATTTGGACCTGTGATGACACTTTCTAAGTTCAAGACCATTGATGATGCAATTAAGAAAGCCAACAGCTCCAAATATGGCTTAGCAGCAGGGATTGTGACCAAGAACTTGGACATTGCAAACACTGTGTCAAGGTCAATCCGTGCAGGAATAATTTGGATCAACTGCTTCTTTGCATTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGCTTGGAAGCACTTCATAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTGCATGGCTTTGA	1524	0.4304	MSSATYPTKLAYNFKWTNMATPTVKFTKLFINGEFVDSVSGKTFETVDPRTEEVIAEIAEATKEDVDIAVKAAREAFDCGPWPRMPGAERAKIMLKWAQLIEQNVEEIAALDTIDGGKLFSWCKAVDVPEACNILRYYAGAADKIHGNVFKTSRDLHLYSLMEPVGVVGHIIPWNFPTVMFFAKVAPALAAGCTMVIKPAEQTPLSALFYAHLAKLGGIPDGVLNVVPGFGSTAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADIDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKRVVEKAKTWVVGDPFDPKVQQGPQTSKTQFDKILSYIDHGKSEGATLLTGGKPVGNKGYYIEPTIFINVKEEMLIEQEEIFGPVMTLSKFKTIDDAIKKANSSKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSAWL	507

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00212	507	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	301	312	IPR016160	GO:0016491
	Viun4g00212	507	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	273	280	IPR029510	GO:0016491
	Viun4g00212	507	FunFam	Aldehyde dehydrogenase, putative	469	495	-	-
	Viun4g00212	507	FunFam	ALD5p Mitochondrial aldehyde dehydrogenase	31	295	-	-
	Viun4g00212	507	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	17	498	-	-
	Viun4g00212	507	SUPERFAMILY	ALDH-like	15	503	IPR016161	GO:0016491
	Viun4g00212	507	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	31	495	IPR016162	GO:0016491
	Viun4g00212	507	Pfam	Aldehyde dehydrogenase family	35	497	IPR015590	GO:0016491
	Viun4g00212	507	FunFam	Aldehyde dehydrogenase3	277	466	-	-
	Viun4g00212	507	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	277	466	IPR016163	GO:0016620

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00212	Viun-Chr4	1198841	1201846	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00212	17	507	Aldehyde Dehydrogenase Gene Family	AT3G24503	68.902	0.0	718

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00212	K12355		-	gmx:100784449	929.087

Showing 1 to 1 of 1 entries