Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00204 ATGATGGAACACAACATCATCAGCAACACCAACAACATCAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGACCCCCTCGACTTCTCTCACTCACTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCATGGCGGAGGTAGGAGCAGCAATTTGCATTTGCATACCCTGAAGCTGGAGGAGTTGGACGACGAGGCCATGGTGCTGGAGATAGCGAAGTTGAAGGAGGAGCAGAAAGCGTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAGCAAATGATGGCTTTTCTGTCAAAGGTTGTGGAGGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAGAAAACACCTCGGCGAGAAAAAGCGACGCCTCATTCCTCCGCCCTCGACGGCGGCGACCTCCTCCTCTTCCTCGTCCGGCATCAAGACGGAGTTCGAAGAGGACGAAGGTAACAACATCATGTCTTCGTCGCCGGAGACGGGTTTGGAAATCGATAATAACAGTAATAATATTATTTGTTCGCCGGCGACGGCGGGGTATTGGGGGGAACAGGGGTGCTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTGACGGTGGTGACGCCGGCGGCGCCGGCGATGGGAGGTGGGTATTTTGGGCGTGGGAGTTATTTTGGGGAAATGGCGGCGGAGGGGAGTGCTCTGCCGCCTTATCCGTTTTCGCTGTTGGAAGGTGGGTTTTAG 960 0.5365 MMEHNIISNTNNINNVIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSSNLHLHTLKLEELDDEAMVLEIAKLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILRERERKHLGEKKRRLIPPPSTAATSSSSSSGIKTEFEEDEGNNIMSSSPETGLEIDNNSNNIICSPATAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYFGRGSYFGEMAAEGSALPPYPFSLLEGGF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00204 319 SMART hsfneu3 16 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 MobiDBLite consensus disorder prediction 194 230 - -
Viun4g00204 319 Coils Coil 126 165 - -
Viun4g00204 319 ProSitePatterns HSF-type DNA-binding domain signature. 59 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 Gene3D - 12 110 IPR036388 -
Viun4g00204 319 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 SUPERFAMILY "Winged helix" DNA-binding domain 17 109 IPR036390 -
Viun4g00204 319 Pfam HSF-type DNA-binding 20 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g00204 319 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 231 IPR027725 -
Viun4g00204 319 FunFam Heat stress transcription factor B-4 12 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00204 Viun-Chr4 1138394 1140076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00204 16 319 HSF AT3G24520 46.246 7.61e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun4g00204 HSF_DNA-bind 5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00204 K09419 - gmx:100794896 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00204 4 1138394 1140076 Viun4g00204 4 1138394 1140076 ECH