Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00197 ATGTCAACAGCCCCAGCGCCGTCTTCGCCGCCGTCCAACAGCACCGCACCTCCGCCGTCCACCCCGTCTGCACCACCGCCCGCCACACCTTCCGCGCCTCCTCCTGCCACTCCGTCGTCACCTCCACCTTCACCTCCGTCGTCTCCGCCCCCAGCGACTCCCTCCGCCCCTCCGCCGGCGACACCTTCTTCGCCACCTCCGTCGACTCCCTCGACTCCGTCTGCTCCTCCACCGTCTACTCCTTCGACTCCATCCCCGCCGGCAACCACTCCACCGTCGAGTTCTCCTCCCTCGCCTCCCTCTGGTTCTCCTCCCTCGCCGCCGTCGGGGTCTCCACCATCGCCACCTAGTGGCGGCGGTGGAGGCGGCAGCACTCCGAGTCCACCGTCTCGGAGCTCGCCTTCTCCTCCGTCCGGATCGAGTCCAACCACGCCTTCGCCTCCGCCGTCGTCTTCTTCGTCGGGTATTTCGACTGGCGTGGTCGTCGGAATCGCCGTGGGGGCAGTCGCGGTTCTTGTTGTGTTAAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAGGAGTACTATGCTCCGCCGCCGCAGCAACCGCCGCGGGGACCCAAAGATGATTACGGTGGTCCACCGCGTCAATGGCAGCACAATGTTCCTCCTCCGCAAGATCATGTGGTTTCAATGATGCCGCCAAAGCCATCGCCTCCACCGGTTCCGGCTTATGCTGCTCAACCTCCTCCTCCTCCGCTTCCTTTCATCAGCAGCAGTGGTGGGTCTGGATCAAACTATTCGGGTGGCGAACCACTTCCTCCTCCTTCTCCGGGAATTTCATTGGGGTTCTCTAAGAGCACTTTCACCTACGAGGAGTTGGCACGCGCCACCGATGGATTCTCCGATGCGAACCTCCTCGGACAAGGTGGATTCGGATATGTTCACAGAGGAATTCTTCCCAACGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGCGGGCAAGGGGAGCGTGAGTTCCAGGCTGAGGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACAGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCATTTGCATGGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTCGCGTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTCAAGTTCGAAGCAAAGGTTGCAGATTTCGGTCTTGCTAAGTTTTCTTCTGATGTTAATACTCACGTTTCCACACGAGTGATGGGGACTTTTGGGTATCTTGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTACTTGAGTTGATAACTGGAAGGCGACCAGTTGATAAAACTCAAACATTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTCTGCTCACACGAGCTTTGGAAGAGGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGATTATGAACCTAATGAGATGGCACGAATGGTGGCATGTGCTGCAGCTTGCACACGTCATTCAGCAAAGCGCCGACCAAGGATGAGCCAGGTTGTGCGTGCTTTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGAAGGAATCAAACCTGGACACAGCACCATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGTACAGTACAAGGAAGACATGAAAAAGTTCAGAAAAATGGCTCTGGGAACTCAGGAATATGGTGCAAGCAGCGAATACAGTGCAGCTACAAGCGAGTACGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCGCAGAGCCGCCAAACCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 2016 0.5337 MSTAPAPSSPPSNSTAPPPSTPSAPPPATPSAPPPATPSSPPPSPPSSPPPATPSAPPPATPSSPPPSTPSTPSAPPPSTPSTPSPPATTPPSSSPPSPPSGSPPSPPSGSPPSPPSGGGGGGSTPSPPSRSSPSPPSGSSPTTPSPPPSSSSSGISTGVVVGIAVGAVAVLVVLSILCICCRKKKRRRDEEYYAPPPQQPPRGPKDDYGGPPRQWQHNVPPPQDHVVSMMPPKPSPPPVPAYAAQPPPPPLPFISSSGGSGSNYSGGEPLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDDFDSIIDPRLQNDYEPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTVQYKEDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNSQGFSGSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00197 671 FunFam proline-rich receptor-like protein kinase PERK1 277 374 - -
Viun4g00197 671 SMART serkin_6 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00197 671 MobiDBLite consensus disorder prediction 10 115 - -
Viun4g00197 671 MobiDBLite consensus disorder prediction 188 279 - -
Viun4g00197 671 MobiDBLite consensus disorder prediction 622 671 - -
Viun4g00197 671 ProSiteProfiles Protein kinase domain profile. 299 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00197 671 MobiDBLite consensus disorder prediction 226 255 - -
Viun4g00197 671 Pfam Protein tyrosine and serine/threonine kinase 304 572 IPR001245 GO:0004672|GO:0006468
Viun4g00197 671 FunFam Proline-rich receptor-like protein kinase PERK1 375 583 - -
Viun4g00197 671 MobiDBLite consensus disorder prediction 129 149 - -
Viun4g00197 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Viun4g00197 671 MobiDBLite consensus disorder prediction 1 157 - -
Viun4g00197 671 Gene3D Transferase(Phosphotransferase) domain 1 375 583 - -
Viun4g00197 671 MobiDBLite consensus disorder prediction 623 651 - -
Viun4g00197 671 Gene3D Phosphorylase Kinase; domain 1 279 374 - -
Viun4g00197 671 SUPERFAMILY Protein kinase-like (PK-like) 274 572 IPR011009 -
Viun4g00197 671 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Viun4g00197 671 PRINTS Proline rich extensin signature 31 43 - -
Viun4g00197 671 PRINTS Proline rich extensin signature 10 26 - -
Viun4g00197 671 PRINTS Proline rich extensin signature 46 67 - -
Viun4g00197 671 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 167 634 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00197 Viun-Chr4 1058917 1062857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00197 127 654 Trihelix Transcription Factor Family AT1G70460 51.601 7.48e-178 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun4g00197 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00197 - - gmx:100781944 854.744