Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00196 ATGGATACAAAGTCGGTGAAGATGAATAAAGAAATTTACGGAAAAACTTGTATATACTGGCGAGCTGGGAGATGTAATAGAAATCCGTGCAAATTTATGCACGCAGAAACACCGTCTACACATACTTCCTATCTCGGTATCAATGCCAAAAGCAAAATTTGTGGGAAAAAGCATCATTCATCTTATAAGATTATCTCCAAGTCCAAGAAAACTTTGGTTCAAAAGAGTGAAGATAGAGACGGGACAAATGTTGTAGTGTCCAAGAAATCATCTCGTACTATATGTAAGTATTGGACCAACAACAGGTGTTTGTATGGTGAACAATGCATCAATTTGCATTCATGGTTTCAAAGTGATGAATTTTCCACAATAGCAGAGCTTCACCAACATAAAAAGGCTATAACTGGAATTACACTTCTAACTGGAACCAACAAACTTTATTCTGGAAGCACTGATGGCACTGTTCGGATATGGGATTGCCATACAGGTCAATCCCTTAAAGTCATAAATTTTGGCACAGAGGTTAACTCTTTGATAAGTGAGGGGCCATGGATTTTTGTTGGTTTGAAGAATGCTATCAAGGCTTTTAATACCAAGACCAATTTAGAGTACACTCTTGATGGACCCAAAGGACGGATCCTTCACATGGCTGTTGGAAACGACATCCTGTTTGTTGGGGCAGAGGATGGTGTCATTACTGCATGGAGAGAAAGCTCTGAAACTAAGTCTCCTTTTGAATTGGCTGGCTCACTGATTGGCCACACTGAATCTGTGGTTTGCCTAATTGTTTCCCTAAATGTTGGATGGAATATGTTGTATTCGGGATCCATGGACCAAAGCATAAAGGTCTGGAACATAGATACATTACAATGTACAATGACACTTAATGAGCATACTGGTGTAGTCACATCCCTTCTCTGTTGGGAAAAATATTTGTTTTCAAGTTCATCTGATGGCACAATTAAAATTTGGGCAATGACAGAAGTGGGAACTTTGGCTGTGGTATATACACACAACGAACAAAGCGGTATTATATCACTTTTTGGGATGCATGATGCAAATGGCAAGCCAATATTGTTTTCCTCTTGTACAGGAAATTTAGTTTGCATGTACGAATTGCCATCATTTTCAGAGAGGGGCCGTTTATTTGCTAAGAAAGACATTACATCATTTGGGTTAGTCGCTGATGGAGGACTCTTTCTCACTGGAGATGGGACTGGTTTGCTTAGGGTGTGGAAATGGAATGAGTTACCTAAGGTGGCATCTAATTAA 1272 0.3947 MDTKSVKMNKEIYGKTCIYWRAGRCNRNPCKFMHAETPSTHTSYLGINAKSKICGKKHHSSYKIISKSKKTLVQKSEDRDGTNVVVSKKSSRTICKYWTNNRCLYGEQCINLHSWFQSDEFSTIAELHQHKKAITGITLLTGTNKLYSGSTDGTVRIWDCHTGQSLKVINFGTEVNSLISEGPWIFVGLKNAIKAFNTKTNLEYTLDGPKGRILHMAVGNDILFVGAEDGVITAWRESSETKSPFELAGSLIGHTESVVCLIVSLNVGWNMLYSGSMDQSIKVWNIDTLQCTMTLNEHTGVVTSLLCWEKYLFSSSSDGTIKIWAMTEVGTLAVVYTHNEQSGIISLFGMHDANGKPILFSSCTGNLVCMYELPSFSERGRLFAKKDITSFGLVADGGLFLTGDGTGLLRVWKWNELPKVASN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00196 423 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Viun4g00196 423 SMART c3hfinal6 90 115 IPR000571 GO:0046872
Viun4g00196 423 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Viun4g00196 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 324 IPR001680 GO:0005515
Viun4g00196 423 Gene3D - 221 421 IPR015943 GO:0005515
Viun4g00196 423 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Viun4g00196 423 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Viun4g00196 423 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Viun4g00196 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 288 - -
Viun4g00196 423 SUPERFAMILY WD40 repeat-like 122 416 IPR036322 GO:0005515
Viun4g00196 423 Gene3D - 10 114 - -
Viun4g00196 423 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Viun4g00196 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 294 IPR001680 GO:0005515
Viun4g00196 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 168 IPR001680 GO:0005515
Viun4g00196 423 SUPERFAMILY CCCH zinc finger 90 114 IPR036855 GO:0046872
Viun4g00196 423 PANTHER - 60 421 IPR044715 -
Viun4g00196 423 Gene3D - 115 220 IPR015943 GO:0005515
Viun4g00196 423 SMART WD40_4 244 285 IPR001680 GO:0005515
Viun4g00196 423 SMART WD40_4 199 236 IPR001680 GO:0005515
Viun4g00196 423 SMART WD40_4 120 159 IPR001680 GO:0005515
Viun4g00196 423 SMART WD40_4 375 413 IPR001680 GO:0005515
Viun4g00196 423 SMART WD40_4 288 325 IPR001680 GO:0005515
Viun4g00196 423 Pfam WD domain, G-beta repeat 124 159 IPR001680 GO:0005515
Viun4g00196 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 159 - -
Viun4g00196 423 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Viun4g00196 423 Pfam Nucleoporin Nup120/160 268 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00196 Viun-Chr4 1036637 1038721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00196 93 294 Eukaryotic Initiation Factors Gene Family AT2G46290 25.000 8.22e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00196 - - vun:114180241 854.744