Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00174 ATGGATCCTCCGGCCAAGAGTTGGAGCATCCACACGCGCTCCGAGATAACTGCCAAGTACGAGGTTGTTGGTCGGGTCGGGTCGGGTGCCTACGCCGACGTATACGACGGACGGCGCCGGTCGGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGGTCCTGAGAGGGTCCCAAAACGTGGTCGTTCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTGGGAACCGACCTCGCCACCGTGATCGGAAAAGGTGGTGTCGGAGCCGGTGAGGTTAAGAGGTGGATGTTGCAGGCTCTGAGTGCTGTGGATGAGTGCCATCGGAATATGATCGTTCATAGAGACTTAAAGCCCGCGAATTTTTTAGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGTGGAGTCGGGATTCGATGCTGACCAGGAAGATGATGATGCTTCAAATAGAGAAAGCTCACTCCAACAAGATCCTGAAGCTACTTCCCAAGAGAACTTAAATCAAACTGAACATGGAAACCCATATCAGAGAACTTTGAGTCATGAAGAATATTTCAGAGTTTTGGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGACGAACTTTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTAGGTGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACACGCTGGTTTCGAGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGTGAGTGTTTTGGGGAACATCAATGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAAAAATCTCTTTTTTAAAGGTGGAAAACCCTAGTGGTCTTGAAGCATGCTTGCTCAATTGCACCCCTGATGAAGTTTCCCTAGTCAAGAGACTGGTTTGTTATGATCCAGATAAGAGAGTCACAGCAATGGAGTTACTTGAAGACAAGTACTTCAGTGAAGTACCTGTTCCTGGTCCAGTTTCTGAGTTGCGGGTTCCTTTGATTAGTATTGGACAAGACAAGGATCGCCCTGGAGGGTACAATGAAATGGGTTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACCACAACTGATTCTGATTTATCTGTACAAATCCCTTGA 1383 0.4758 MDPPAKSWSIHTRSEITAKYEVVGRVGSGAYADVYDGRRRSDGAAVALKEVHDSQSASREIEALRVLRGSQNVVVLHEFFWREDEDAVLVLEFLGTDLATVIGKGGVGAGEVKRWMLQALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVESGFDADQEDDDASNRESSLQQDPEATSQENLNQTEHGNPYQRTLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTTSDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCSKLPDYGKISFLKVENPSGLEACLLNCTPDEVSLVKRLVCYDPDKRVTAMELLEDKYFSEVPVPGPVSELRVPLISIGQDKDRPGGYNEMGSDSDLEEFRTLNITTTDSDLSVQIP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00174 460 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Viun4g00174 460 SUPERFAMILY Protein kinase-like (PK-like) 13 407 IPR011009 -
Viun4g00174 460 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Viun4g00174 460 ProSiteProfiles Protein kinase domain profile. 20 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00174 460 Pfam Protein kinase domain 273 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00174 460 Pfam Protein kinase domain 20 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00174 460 MobiDBLite consensus disorder prediction 180 202 - -
Viun4g00174 460 MobiDBLite consensus disorder prediction 166 202 - -
Viun4g00174 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Viun4g00174 460 PANTHER CELL DIVISION PROTEIN KINASE 19 407 - -
Viun4g00174 460 FunFam Cyclin-dependent kinase F-1 11 105 - -
Viun4g00174 460 Gene3D Transferase(Phosphotransferase) domain 1 105 408 - -
Viun4g00174 460 SMART serkin_6 20 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00174 Viun-Chr4 920209 922320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00174 4 460 Core Cell Cycle Gene Families AT4G28980 57.684 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Viun4g00174 Pkinase 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00174 - - gmx:548056 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00174 4 920209 922320 Viun4g00174 4 920209 922320 ECH